Variant report

Variant	rs2844576
Chromosome Location	chr6:31334601-31334602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:31334297-31335259	HCT-116	colon:	n/a	chr6:31334843-31334856 chr6:31334841-31334859 chr6:31334843-31334856 chr6:31334847-31334856 chr6:31335144-31335157 chr6:31335141-31335159 chr6:31334836-31334857 chr6:31334844-31334854 chr6:31334842-31334858
2	PML	chr6:31334298-31335038	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:31334582-31334786	MCF-7	breast:	n/a	n/a
4	MTA3	chr6:31334558-31335218	GM12878	blood:	n/a	n/a
5	BCLAF1	chr6:31334586-31335058	GM12878	blood:	n/a	n/a
6	MAZ	chr6:31334485-31335134	IMR90	lung:	n/a	chr6:31335115-31335125
7	CTCF	chr6:31334240-31335257	A549	lung:	n/a	chr6:31334843-31334856 chr6:31334841-31334859 chr6:31334843-31334856 chr6:31334847-31334856 chr6:31335144-31335157 chr6:31335141-31335159 chr6:31334836-31334857 chr6:31334844-31334854 chr6:31334842-31334858
8	CEBPB	chr6:31334460-31334873	HepG2	liver:	n/a	n/a
9	RAD21	chr6:31334532-31335165	MCF-7	breast:	n/a	chr6:31335143-31335157 chr6:31334848-31334857 chr6:31335142-31335161 chr6:31334841-31334853 chr6:31335147-31335159 chr6:31334839-31334858
10	FOXM1	chr6:31334557-31335106	GM12878	blood:	n/a	n/a
11	MAX	chr6:31334552-31335113	A549	lung:	n/a	n/a
12	RAD21	chr6:31334557-31335065	HepG2	liver:	n/a	chr6:31334848-31334857 chr6:31334841-31334853 chr6:31334839-31334858
13	IRF4	chr6:31334560-31335100	GM12878	blood:	n/a	n/a
14	RAD21	chr6:31334455-31335162	MCF-7	breast:	n/a	chr6:31335143-31335157 chr6:31334848-31334857 chr6:31335142-31335161 chr6:31334841-31334853 chr6:31335147-31335159 chr6:31334839-31334858
15	YY1	chr6:31334579-31334964	K562	blood:	n/a	chr6:31334714-31334728
16	CBX3	chr6:31334488-31335041	K562	blood:	n/a	n/a
17	RUNX3	chr6:31334483-31335082	GM12878	blood:	n/a	n/a
18	RAD21	chr6:31334408-31335259	HCT-116	colon:	n/a	chr6:31335143-31335157 chr6:31334848-31334857 chr6:31335142-31335161 chr6:31334841-31334853 chr6:31335147-31335159 chr6:31334839-31334858
19	TEAD4	chr6:31334565-31335041	K562	blood:	n/a	n/a
20	CEBPB	chr6:31334528-31335030	Hela-S3	cervix:	n/a	n/a
21	TBP	chr6:31334571-31334979	H1-hESC	embryonic stem cell:	n/a	n/a
22	SMC3	chr6:31334568-31335054	GM12878	blood:	n/a	chr6:31334843-31334857 chr6:31334849-31334857 chr6:31334843-31334853
23	SMC3	chr6:31334321-31335263	SK-N-SH	brain:	n/a	chr6:31334843-31334857 chr6:31334849-31334857 chr6:31334843-31334853 chr6:31335143-31335157
24	YY1	chr6:31334601-31334903	SK-N-SH_RA	brain:	n/a	chr6:31334714-31334728
25	CEBPB	chr6:31334538-31334970	H1-hESC	embryonic stem cell:	n/a	n/a
26	CTCF	chr6:31334552-31335136	MCF-7	breast:	n/a	chr6:31334843-31334856 chr6:31334841-31334859 chr6:31334843-31334856 chr6:31334847-31334856 chr6:31334836-31334857 chr6:31334844-31334854 chr6:31334842-31334858
27	RAD21	chr6:31334512-31335054	ECC-1	luminal epithelium:	n/a	chr6:31334848-31334857 chr6:31334841-31334853 chr6:31334839-31334858
28	RAD21	chr6:31334439-31335277	SK-N-SH	brain:	n/a	chr6:31335143-31335157 chr6:31334848-31334857 chr6:31335142-31335161 chr6:31334841-31334853 chr6:31335147-31335159 chr6:31334839-31334858
29	RAD21	chr6:31334479-31335189	HCT-116	colon:	n/a	chr6:31335143-31335157 chr6:31334848-31334857 chr6:31335142-31335161 chr6:31334841-31334853 chr6:31335147-31335159 chr6:31334839-31334858
30	CTCF	chr6:31334507-31335193	HCT-116	colon:	n/a	chr6:31334843-31334856 chr6:31334841-31334859 chr6:31334843-31334856 chr6:31334847-31334856 chr6:31335144-31335157 chr6:31335141-31335159 chr6:31334836-31334857 chr6:31334844-31334854 chr6:31334842-31334858
31	TCF7L2	chr6:31334555-31335063	HCT-116	colon:	n/a	n/a
32	MAX	chr6:31334500-31335091	MCF-7	breast:	n/a	n/a
33	YY1	chr6:31334545-31334999	H1-hESC	embryonic stem cell:	n/a	chr6:31334714-31334728
34	CTCF	chr6:31334539-31335110	MCF-7	breast:	n/a	chr6:31334843-31334856 chr6:31334841-31334859 chr6:31334843-31334856 chr6:31334847-31334856 chr6:31334836-31334857 chr6:31334844-31334854 chr6:31334842-31334858
35	CTCF	chr6:31334513-31335067	H1-hESC	embryonic stem cell:	n/a	chr6:31334843-31334856 chr6:31334841-31334859 chr6:31334843-31334856 chr6:31334847-31334856 chr6:31334836-31334857 chr6:31334844-31334854 chr6:31334842-31334858
36	KAP1	chr6:31334504-31335126	HEK293	kidney:	n/a	n/a
37	ATF2	chr6:31334516-31335091	H1-hESC	embryonic stem cell:	n/a	n/a
38	SP1	chr6:31334596-31335050	A549	lung:	n/a	n/a
39	TBL1XR1	chr6:31334543-31335025	GM12878	blood:	n/a	n/a
40	RAD21	chr6:31334563-31334985	SK-N-SH_RA	brain:	n/a	chr6:31334848-31334857 chr6:31334841-31334853 chr6:31334839-31334858
41	RAD21	chr6:31334441-31335184	H1-hESC	embryonic stem cell:	n/a	chr6:31335143-31335157 chr6:31334848-31334857 chr6:31335142-31335161 chr6:31334841-31334853 chr6:31335147-31335159 chr6:31334839-31334858
42	ZNF263	chr6:31334570-31335163	HEK293-T-REx	kidney:	n/a	n/a
43	RAD21	chr6:31334569-31335098	H1-hESC	embryonic stem cell:	n/a	chr6:31334848-31334857 chr6:31334841-31334853 chr6:31334839-31334858
44	STAT5A	chr6:31334578-31335072	GM12878	blood:	n/a	n/a
45	ZEB1	chr6:31334553-31334786	GM12878	blood:	n/a	n/a
46	RAD21	chr6:31334512-31335119	H1-hESC	embryonic stem cell:	n/a	chr6:31334848-31334857 chr6:31334841-31334853 chr6:31334839-31334858
47	RAD21	chr6:31334477-31335111	A549	lung:	n/a	chr6:31334848-31334857 chr6:31334841-31334853 chr6:31334839-31334858
48	YY1	chr6:31334543-31335005	HepG2	liver:	n/a	chr6:31334714-31334728
49	FOXM1	chr6:31334578-31335021	GM12878	blood:	n/a	n/a
50	HA-E2F1	chr6:31334501-31335144	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31164797..31165692-chr6:31334361..31335283,4	K562	blood:
2	chr6:31163696..31166940-chr6:31333321..31336541,7	MCF-7	breast:
3	chr6:31104961..31105839-chr6:31334399..31335415,6	K562	blood:

Variant related genes	Relation type
RNU6-283P	TF binding region
ENSG00000272501	Chromatin interaction
ENSG00000204540	Chromatin interaction
ENSG00000206344	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs2254556	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2442738	0.87[EUR][1000 genomes]
rs2507974	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2507977	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2507982	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2507988	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2523485	0.92[AMR][1000 genomes]
rs2523486	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2523487	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2523488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2523518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2523537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2523553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523555	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2523556	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523566	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2523644	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2596427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596429	0.92[AMR][1000 genomes]
rs2596433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2853991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2905716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2922995	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3016014	0.82[AFR][1000 genomes]
rs3016015	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3099849	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3130485	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3997982	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3997993	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4959017	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4959018	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9266363	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9266513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9266596	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9266630	0.83[AFR][1000 genomes]
rs9266784	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:91 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
10	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
13	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
14	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
15	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
16	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
17	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
18	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
20	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
23	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
24	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
25	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
26	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
27	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
28	nsv601503	chr6:31237229-31336891	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
29	nsv601507	chr6:31237586-31339844	Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
30	esv2752834	chr6:31242621-31343821	Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
31	esv2757161	chr6:31251360-31335707	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
32	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
33	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
34	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
35	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
36	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
37	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
38	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
39	nsv1018705	chr6:31277798-31337397	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
40	nsv538183	chr6:31277798-31337397	Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
41	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
42	nsv1029678	chr6:31279535-31449207	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
43	nsv538185	chr6:31279535-31449207	Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
44	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
45	nsv601608	chr6:31280101-31389784	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
46	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
47	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
48	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
49	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
50	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2844576	CCHCR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31334200-31335000	Active TSS	Primary T killer memory cells from peripheral blood	blood
2	chr6:31334400-31334800	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:31334400-31334800	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr6:31334400-31334800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
5	chr6:31334400-31334800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr6:31334400-31334800	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:31334400-31334800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:31334400-31334800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:31334400-31334800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:31334400-31334800	Bivalent Enhancer	Fetal Brain Male	brain
11	chr6:31334400-31334800	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr6:31334400-31334800	Flanking Bivalent TSS/Enh	A549	lung
13	chr6:31334400-31334800	Flanking Active TSS	HMEC	breast
14	chr6:31334400-31334800	Bivalent Enhancer	HSMMtube	muscle
15	chr6:31334400-31334800	Bivalent/Poised TSS	NHDF-Ad	bronchial
16	chr6:31334400-31335000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
17	chr6:31334400-31335000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr6:31334400-31335000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:31334400-31335000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
20	chr6:31334400-31335000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
21	chr6:31334400-31335000	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr6:31334400-31335000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
23	chr6:31334400-31335000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
24	chr6:31334400-31335000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:31334400-31335000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr6:31334400-31335000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:31334400-31335000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:31334400-31335000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:31334400-31335000	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr6:31334400-31335000	Enhancers	Liver	Liver
31	chr6:31334400-31335000	Active TSS	Brain Hippocampus Middle	brain
32	chr6:31334400-31335000	Active TSS	Colon Smooth Muscle	Colon
33	chr6:31334400-31335000	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chr6:31334400-31335000	Flanking Active TSS	GM12878-XiMat	blood
35	chr6:31334400-31335200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr6:31334400-31335200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr6:31334400-31335200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr6:31334400-31335200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:31334400-31335200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr6:31334400-31335200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:31334400-31335200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:31334400-31335200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr6:31334400-31335200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:31334400-31335200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:31334400-31335200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
46	chr6:31334400-31335200	Active TSS	Brain Anterior Caudate	brain
47	chr6:31334400-31335200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:31334400-31335200	Active TSS	Colonic Mucosa	Colon
49	chr6:31334400-31335200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
50	chr6:31334400-31335200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links