The 2.0 version of rSNPBase

Variant report

Variant rs28446525
Chromosome Location chr1:156355560-156355561
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:156339600-156358000 Weak transcription Right Atrium heart
2 chr1:156349800-156355600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:156349800-156355600 Weak transcription A549 lung
4 chr1:156349800-156356000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:156351200-156355600 Strong transcription Fetal Intestine Small intestine
6 chr1:156352600-156355800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr1:156353200-156355600 Strong transcription HepG2 liver
8 chr1:156353800-156356200 Enhancers Primary hematopoietic stem cells short term culture blood
9 chr1:156354400-156355600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr1:156354400-156355600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:156354400-156355800 Enhancers Placenta Placenta
12 chr1:156354800-156355600 Weak transcription Primary hematopoietic stem cells blood
13 chr1:156354800-156355800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:156354800-156357200 Enhancers Brain Cingulate Gyrus brain
15 chr1:156354800-156357800 Enhancers Cortex derived primary cultured neurospheres brain
16 chr1:156355000-156355800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
17 chr1:156355000-156355800 Enhancers Brain Substantia Nigra brain
18 chr1:156355000-156355800 Enhancers HSMM muscle
19 chr1:156355000-156356200 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr1:156355000-156356200 Enhancers Fetal Brain Female brain
21 chr1:156355000-156357400 Enhancers Brain Hippocampus Middle brain
22 chr1:156355000-156357400 Enhancers Brain Inferior Temporal Lobe brain
23 chr1:156355000-156357600 Weak transcription Ovary ovary
24 chr1:156355000-156357800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:156355200-156355600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:156355200-156355600 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:156355200-156355800 Bivalent Enhancer Fetal Muscle Leg muscle
28 chr1:156355200-156356200 Bivalent Enhancer Fetal Thymus thymus
29 chr1:156355200-156356400 Bivalent Enhancer Primary T cells fromperipheralblood blood
30 chr1:156355200-156357400 Enhancers Brain Anterior Caudate brain
31 chr1:156355400-156355600 Bivalent Enhancer hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr1:156355400-156355600 Flanking Active TSS Brain Germinal Matrix brain
33 chr1:156355400-156355800 Enhancers Primary T regulatory cells fromperipheralblood blood
34 chr1:156355400-156355800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:156355400-156355800 Enhancers Primary Natural Killer cells fromperipheralblood blood
36 chr1:156355400-156355800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:156355400-156355800 Enhancers Primary mononuclear cells fromperipheralblood Blood
38 chr1:156355400-156356000 Enhancers Primary B cells from peripheral blood blood
39 chr1:156355400-156356000 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr1:156355400-156356000 Enhancers Primary T helper cells fromperipheralblood blood
41 chr1:156355400-156356000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:156355400-156356000 Weak transcription Fetal Intestine Large intestine
43 chr1:156355400-156356200 Enhancers Primary T killer naive cells fromperipheralblood blood
44 chr1:156355400-156356200 Enhancers Primary T killer memory cells from peripheral blood blood
45 chr1:156355400-156356200 Enhancers Brain Angular Gyrus brain
46 chr1:156355400-156356200 Enhancers Fetal Brain Male brain
47 chr1:156355400-156356200 Bivalent Enhancer Fetal Muscle Trunk muscle
48 chr1:156355400-156356200 Enhancers Dnd41 blood

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Last update: Aug 31, 2015