Variant report
Variant | rs2844656 |
---|---|
Chromosome Location | chr6:30834331-30834332 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000204580 | Chromatin interaction |
ENSG00000237775 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1049633 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1059612 | 0.90[AMR][1000 genomes] |
rs1264308 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1264325 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1264347 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1264351 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1264361 | 0.87[EUR][1000 genomes] |
rs1264373 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1634716 | 1.00[AMR][1000 genomes] |
rs1634721 | 1.00[AMR][1000 genomes] |
rs1634726 | 0.89[AMR][1000 genomes] |
rs2263298 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2517546 | 0.90[AMR][1000 genomes] |
rs2517578 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2524266 | 0.92[EUR][1000 genomes] |
rs2535328 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2535332 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2535334 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2535340 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2844661 | 0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs3094088 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3095152 | 0.81[AMR][1000 genomes] |
rs3095153 | 0.81[AMR][1000 genomes] |
rs3095156 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs3095326 | 0.81[AMR][1000 genomes] |
rs3095328 | 0.81[AMR][1000 genomes] |
rs3095332 | 0.81[AMR][1000 genomes] |
rs3129973 | 0.81[AMR][1000 genomes] |
rs3129974 | 0.81[AMR][1000 genomes] |
rs3129980 | 0.80[EUR][1000 genomes] |
rs3129982 | 0.80[EUR][1000 genomes] |
rs3129983 | 0.80[EUR][1000 genomes] |
rs3129984 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs3129985 | 0.80[EUR][1000 genomes] |
rs3130641 | 0.83[EUR][1000 genomes] |
rs3130668 | 0.81[AMR][1000 genomes] |
rs3131041 | 0.82[EUR][1000 genomes] |
rs3131044 | 0.80[EUR][1000 genomes] |
rs3131045 | 0.80[EUR][1000 genomes] |
rs3131047 | 0.80[EUR][1000 genomes] |
rs3131049 | 0.80[EUR][1000 genomes] |
rs3131050 | 0.80[EUR][1000 genomes] |
rs3131052 | 0.81[EUR][1000 genomes] |
rs3131055 | 0.80[EUR][1000 genomes] |
rs3131058 | 0.80[EUR][1000 genomes] |
rs3131060 | 0.80[EUR][1000 genomes] |
rs3131781 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs3132577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3132580 | 0.81[AMR][1000 genomes] |
rs3132581 | 0.81[AMR][1000 genomes] |
rs3132600 | 0.81[EUR][1000 genomes] |
rs886422 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs886424 | 0.87[EUR][1000 genomes] |
rs886425 | 0.87[EUR][1000 genomes] |
rs9262200 | 0.80[EUR][1000 genomes] |
rs9262202 | 0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3519970 | chr6:30382942-31378788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1030 gene(s) | inside rSNPs | diseases |
2 | esv3519971 | chr6:30382942-31378788 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1030 gene(s) | inside rSNPs | diseases |
3 | nsv601481 | chr6:30422632-31284253 | Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 1012 gene(s) | inside rSNPs | diseases |
4 | nsv1015372 | chr6:30704734-31582152 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 334 gene(s) | inside rSNPs | diseases |
5 | nsv538173 | chr6:30704734-31582152 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 334 gene(s) | inside rSNPs | diseases |
6 | nsv884108 | chr6:30821187-30838497 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
7 | nsv884109 | chr6:30824532-30872203 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:30823600-30835400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |