Variant report

Variant	rs28447378
Chromosome Location	chr16:31930248-31930249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31930170..31932707-chr16:31934024..31936447,2	K562	blood:
2	chr16:31929972..31932646-chr16:31933691..31936236,4	MCF-7	breast:
3	chr16:31929792..31932707-chr16:31934299..31936447,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28615692	0.87[AFR][1000 genomes]
rs28881597	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31917000-31931200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:31917000-31931600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr16:31917000-31932000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
4	chr16:31917000-31932200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr16:31917000-31932400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:31917000-31932400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr16:31917000-31934000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:31917000-31935200	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr16:31917000-31935400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:31917200-31930600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr16:31917200-31930800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr16:31917200-31931600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
13	chr16:31917400-31930600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:31918000-31930400	ZNF genes & repeats	A549	lung
15	chr16:31919600-31930400	ZNF genes & repeats	Dnd41	blood
16	chr16:31920400-31930400	ZNF genes & repeats	GM12878-XiMat	blood
17	chr16:31921200-31932400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:31922400-31931800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
19	chr16:31922400-31931800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
20	chr16:31922400-31932000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr16:31922400-31932400	ZNF genes & repeats	Liver	Liver
22	chr16:31922600-31931400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:31922800-31930400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr16:31922800-31930400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
25	chr16:31922800-31932000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
26	chr16:31922800-31932000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
27	chr16:31923000-31930400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
28	chr16:31923000-31931400	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr16:31923200-31931400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
30	chr16:31923400-31930800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr16:31923600-31931400	ZNF genes & repeats	HSMM	muscle
32	chr16:31924200-31930600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr16:31924400-31930400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr16:31924400-31930600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
35	chr16:31924400-31931200	ZNF genes & repeats	HSMMtube	muscle
36	chr16:31924800-31931200	ZNF genes & repeats	Brain Angular Gyrus	brain
37	chr16:31926400-31930400	ZNF genes & repeats	Psoas Muscle	Psoas
38	chr16:31927800-31931000	Weak transcription	Fetal Thymus	thymus
39	chr16:31928600-31930800	ZNF genes & repeats	HMEC	breast
40	chr16:31928600-31931000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr16:31928800-31930400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr16:31928800-31930400	ZNF genes & repeats	Colonic Mucosa	Colon
43	chr16:31928800-31930600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr16:31928800-31932000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr16:31929400-31932000	ZNF genes & repeats	Brain Hippocampus Middle	brain
46	chr16:31930000-31930400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr16:31930000-31930400	ZNF genes & repeats	Left Ventricle	heart
48	chr16:31930000-31931000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr16:31930200-31931000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr16:31930200-31931000	Weak transcription	Pancreas	Pancrea

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