Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr3:133461244-133462392	HepG2	liver:	n/a	chr3:133461580-133461595 chr3:133461892-133461904 chr3:133461582-133461594
2	FOXA1	chr3:133461271-133462507	HepG2	liver:	n/a	chr3:133461580-133461595 chr3:133461892-133461904 chr3:133461582-133461594
3	FOXA2	chr3:133462178-133462500	HepG2	liver:	n/a	n/a
4	NR2F2	chr3:133461210-133462378	MCF-7	breast:	n/a	n/a
5	RFX5	chr3:133462232-133462422	HepG2	liver:	n/a	n/a
6	RCOR1	chr3:133461426-133462454	HepG2	liver:	n/a	n/a
7	GATA3	chr3:133461084-133462420	MCF-7	breast:	n/a	chr3:133462043-133462050 chr3:133462043-133462050 chr3:133462043-133462050
8	MAX	chr3:133461136-133462444	MCF-7	breast:	n/a	n/a
9	FOXA1	chr3:133461105-133462456	HepG2	liver:	n/a	chr3:133461580-133461595 chr3:133461892-133461904 chr3:133461582-133461594
10	FOXA2	chr3:133460833-133462885	HepG2	liver:	n/a	chr3:133461892-133461904 chr3:133461582-133461594

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133379775..133382913-chr3:133460288..133462996,3	MCF-7	breast:
2	chr3:133460249..133463891-chr3:133464263..133466995,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8177187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133460400-133464600	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr3:133460800-133462600	Flanking Active TSS	Liver	Liver
3	chr3:133460800-133462800	Enhancers	Pancreas	Pancrea
4	chr3:133460800-133464600	Enhancers	Brain Angular Gyrus	brain
5	chr3:133461200-133462400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:133461400-133462400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:133461400-133462400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:133461600-133462400	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr3:133461600-133464400	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:133461600-133464400	Enhancers	Brain Substantia Nigra	brain
11	chr3:133461800-133462400	Flanking Active TSS	A549	lung
12	chr3:133461800-133463400	Flanking Active TSS	HepG2	liver
13	chr3:133461800-133464400	Enhancers	Brain Hippocampus Middle	brain
14	chr3:133461800-133464600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:133462000-133462400	Bivalent Enhancer	Fetal Lung	lung
16	chr3:133462000-133464600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:133462200-133462400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:133462200-133463600	Weak transcription	K562	blood
19	chr3:133462200-133464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:133462200-133464400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search: