Variant report

Variant	rs28451759
Chromosome Location	chr5:68793934-68793935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:68787711..68790252-chr5:68793070..68796415,3	K562	blood:
2	chr5:68791729..68794377-chr5:68827769..68829901,2	MCF-7	breast:
3	chr5:68786861..68791714-chr5:68792845..68799561,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197822	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28616120	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28633210	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018410	chr5:68692244-68822384	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1023116	chr5:68744307-68867282	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034024	chr5:68760271-69118123	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28451759	GUSBP3	cis	Whole Blood	GTEx
rs28451759	OCLN	cis	Artery Tibial	GTEx

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68790000-68798200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:68790200-68795800	Weak transcription	Colonic Mucosa	Colon
3	chr5:68790200-68797400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:68790200-68797400	Weak transcription	HMEC	breast
5	chr5:68790200-68797400	Weak transcription	HUVEC	blood vessel
6	chr5:68790200-68824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:68790600-68801600	Weak transcription	Gastric	stomach
8	chr5:68790800-68798600	Weak transcription	Lung	lung
9	chr5:68791200-68798000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:68791400-68798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:68791600-68795800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:68791600-68798400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:68791800-68795000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:68792800-68798000	Weak transcription	NHLF	lung
15	chr5:68792800-68798200	Weak transcription	Fetal Kidney	kidney
16	chr5:68793000-68794200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:68793000-68794600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:68793000-68795000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:68793000-68795200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:68793000-68795600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:68793000-68795600	Weak transcription	HepG2	liver
22	chr5:68793000-68795800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:68793000-68795800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:68793000-68797400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:68793000-68797600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:68793000-68798200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:68793000-68798200	Weak transcription	HSMM	muscle
28	chr5:68793200-68795000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr5:68793200-68795800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:68793200-68795800	Weak transcription	Fetal Lung	lung
31	chr5:68793200-68796600	Weak transcription	Liver	Liver
32	chr5:68793200-68797600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:68793200-68798200	Weak transcription	GM12878-XiMat	blood
34	chr5:68793200-68798400	Weak transcription	HSMMtube	muscle
35	chr5:68793200-68813600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr5:68793400-68795600	Weak transcription	Stomach Mucosa	stomach
37	chr5:68793400-68795800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr5:68793400-68795800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr5:68793400-68801600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr5:68793600-68794000	Weak transcription	Fetal Intestine Large	intestine
41	chr5:68793600-68794000	Weak transcription	A549	lung
42	chr5:68793600-68795400	Weak transcription	Pancreas	Pancrea
43	chr5:68793600-68798600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:68793600-68800200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:68793600-68806000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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