Variant report

Variant	rs28454261
Chromosome Location	chr7:70667728-70667729
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10227106	1.00[AMR][1000 genomes]
rs10233052	1.00[AMR][1000 genomes]
rs10262011	1.00[AMR][1000 genomes]
rs11973185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974065	1.00[AMR][1000 genomes]
rs11974138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11974315	1.00[AMR][1000 genomes]
rs11975356	1.00[AMR][1000 genomes]
rs11976420	1.00[AMR][1000 genomes]
rs11980728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17143004	1.00[AMR][1000 genomes]
rs57584337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57793774	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58101867	1.00[AMR][1000 genomes]
rs59049780	1.00[AMR][1000 genomes]
rs61175396	1.00[AMR][1000 genomes]
rs6962909	1.00[AMR][1000 genomes]
rs6968577	1.00[AMR][1000 genomes]
rs6978549	1.00[AMR][1000 genomes]
rs73364041	1.00[AMR][1000 genomes]
rs73364047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365927	1.00[AMR][1000 genomes]
rs73365932	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365946	1.00[AMR][1000 genomes]
rs73365949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70664000-70674000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:70664200-70675600	Weak transcription	Right Atrium	heart
3	chr7:70665400-70672200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:70665600-70674600	Weak transcription	Ovary	ovary
5	chr7:70666600-70674000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70667000-70701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70667600-70669400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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