Variant report

Variant	rs28454521
Chromosome Location	chr15:31777595-31777596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31775112..31777688-chr15:31780214..31782887,2	K562	blood:
2	chr15:31748477..31753108-chr15:31776889..31783172,7	MCF-7	breast:
3	chr15:31728928..31731704-chr15:31776995..31778781,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11071075	0.83[AMR][1000 genomes]
rs11071076	0.83[AMR][1000 genomes]
rs11071094	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12439310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12440316	0.83[AMR][1000 genomes]
rs12441588	0.81[AMR][1000 genomes]
rs2338680	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4779534	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493688	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6493689	0.81[ASN][1000 genomes]
rs755812	0.82[AMR][1000 genomes]
rs8038953	0.83[AMR][1000 genomes]
rs8040427	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1824097	chr15:31772875-31778703	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv827281	chr15:31773227-31779565	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv827282	chr15:31773680-31778948	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3436746	chr15:31773760-31777958	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3438047	chr15:31775285-31777833	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1811144	chr15:31775602-31791836	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv568824	chr15:31776343-31787108	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
2	chr15:31775400-31780400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:31775800-31779000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:31775800-31779600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:31776000-31780000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:31776000-31780000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:31776000-31780200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:31776000-31780600	Weak transcription	Left Ventricle	heart
9	chr15:31776200-31777600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:31776200-31780600	Weak transcription	Right Atrium	heart
11	chr15:31776400-31778800	Strong transcription	Brain Hippocampus Middle	brain
12	chr15:31776600-31777600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
13	chr15:31776600-31780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:31776800-31779600	Weak transcription	Pancreas	Pancrea
15	chr15:31776800-31779800	Weak transcription	Gastric	stomach
16	chr15:31776800-31780000	Weak transcription	Colonic Mucosa	Colon
17	chr15:31776800-31780600	Weak transcription	Brain Anterior Caudate	brain
18	chr15:31777000-31777600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:31777000-31777800	Weak transcription	Spleen	Spleen
20	chr15:31777000-31780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:31777000-31780600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:31777000-31780600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:31777200-31777800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr15:31777200-31778400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:31777200-31778800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr15:31777200-31780000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:31777200-31780000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:31777200-31780000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:31777200-31780000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:31777200-31780200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:31777200-31780200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:31777200-31780400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:31777200-31780400	Weak transcription	Lung	lung
34	chr15:31777400-31777600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr15:31777400-31777800	Weak transcription	Esophagus	oesophagus
36	chr15:31777400-31778200	Bivalent Enhancer	Fetal Brain Male	brain
37	chr15:31777400-31780000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:31777400-31780200	Weak transcription	Primary T cells from cord blood	blood

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