Variant report

Variant	rs28456234
Chromosome Location	chr14:56110265-56110266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10131087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136120	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10138893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498476	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17128653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7140434	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1792376	chr14:56108007-56150151	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
2	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr14:56080800-56110800	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr14:56087400-56111800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:56087400-56112200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:56087400-56132200	Strong transcription	Dnd41	blood
7	chr14:56087600-56145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:56088200-56129400	Weak transcription	Spleen	Spleen
9	chr14:56088200-56132200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:56088400-56121600	Weak transcription	Aorta	Aorta
11	chr14:56088400-56121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:56088400-56153200	Weak transcription	Gastric	stomach
13	chr14:56092800-56135400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:56094400-56113000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:56094400-56132600	Strong transcription	HSMM	muscle
16	chr14:56095000-56142200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:56096200-56112000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:56097600-56115600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:56097600-56145200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:56097600-56155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:56098600-56121600	Weak transcription	Small Intestine	intestine
22	chr14:56099000-56128000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:56099400-56118600	Strong transcription	Hela-S3	cervix
24	chr14:56100200-56131000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:56100400-56112600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr14:56100800-56112200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr14:56101000-56132800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr14:56101400-56112800	Strong transcription	Primary B cells from cord blood	blood
29	chr14:56101800-56118200	Weak transcription	Fetal Brain Female	brain
30	chr14:56101800-56121600	Weak transcription	Pancreas	Pancrea
31	chr14:56101800-56123200	Weak transcription	Fetal Intestine Small	intestine
32	chr14:56101800-56128800	Weak transcription	Fetal Stomach	stomach
33	chr14:56101800-56162800	Weak transcription	Brain Germinal Matrix	brain
34	chr14:56102400-56121600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:56102400-56121600	Weak transcription	Esophagus	oesophagus
36	chr14:56102400-56145200	Weak transcription	Lung	lung
37	chr14:56102400-56185400	Weak transcription	Right Ventricle	heart
38	chr14:56103200-56117000	Weak transcription	K562	blood
39	chr14:56103400-56130600	Weak transcription	Thymus	Thymus
40	chr14:56104000-56115800	Weak transcription	Brain Angular Gyrus	brain
41	chr14:56104600-56119600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:56104600-56121600	Weak transcription	Ovary	ovary
43	chr14:56104600-56127600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr14:56104800-56111800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:56104800-56112600	Weak transcription	HSMMtube	muscle
46	chr14:56104800-56121600	Weak transcription	Left Ventricle	heart
47	chr14:56104800-56128800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:56104800-56157400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr14:56105000-56122600	Weak transcription	NHLF	lung
50	chr14:56105000-56129200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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