Variant report

Variant	rs28456970
Chromosome Location	chr4:90547383-90547384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10000914	0.83[AMR][1000 genomes]
rs10001007	0.83[AMR][1000 genomes]
rs10005588	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10012402	0.83[AMR][1000 genomes]
rs10012586	0.83[AMR][1000 genomes]
rs10012803	0.83[AMR][1000 genomes]
rs10023171	0.83[AMR][1000 genomes]
rs10025619	0.87[ASN][1000 genomes]
rs11728767	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12502730	0.83[AMR][1000 genomes]
rs12510321	0.83[AMR][1000 genomes]
rs17015987	0.84[ASN][1000 genomes]
rs17015992	0.84[ASN][1000 genomes]
rs28408495	0.83[AMR][1000 genomes]
rs28419161	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28437605	0.83[AMR][1000 genomes]
rs28445774	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28459090	0.83[AMR][1000 genomes]
rs28473552	0.83[AMR][1000 genomes]
rs28505526	0.83[AMR][1000 genomes]
rs28505884	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28550468	0.83[AMR][1000 genomes]
rs28667466	0.83[AMR][1000 genomes]
rs28684694	0.83[AMR][1000 genomes]
rs28709174	0.81[AMR][1000 genomes]
rs28812304	0.83[ASN][1000 genomes]
rs60359355	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9307074	0.83[ASN][1000 genomes]
rs9992727	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv879534	chr4:90498133-90591889	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv4417	chr4:90515836-90560439	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90545000-90548000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:90546600-90547800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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