Variant report

Variant	rs28459035
Chromosome Location	chr15:40533485-40533486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57537959	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv904095	chr15:40525430-40591570	Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv471240	chr15:40528155-40595627	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40530600-40534000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:40530600-40534000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:40530800-40534400	Flanking Active TSS	HMEC	breast
4	chr15:40531200-40533600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:40531800-40534000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:40531800-40534400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:40531800-40535000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:40531800-40542400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40532000-40534600	Weak transcription	K562	blood
10	chr15:40532000-40537000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:40532000-40537000	Weak transcription	Pancreas	Pancrea
12	chr15:40532200-40533600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:40532200-40537000	Weak transcription	Fetal Lung	lung
14	chr15:40532200-40537200	Weak transcription	Gastric	stomach
15	chr15:40532200-40537400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:40532600-40534400	Weak transcription	Fetal Brain Female	brain
17	chr15:40532600-40537000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:40532800-40534000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr15:40532800-40537200	Weak transcription	Fetal Thymus	thymus
20	chr15:40533000-40533600	Enhancers	HSMM	muscle
21	chr15:40533000-40534000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:40533000-40534000	Flanking Active TSS	NHEK	skin
23	chr15:40533000-40537200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:40533200-40533600	Enhancers	Brain Angular Gyrus	brain
25	chr15:40533200-40533800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:40533200-40534200	Enhancers	Placenta	Placenta
27	chr15:40533200-40537200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:40533400-40533600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
29	chr15:40533400-40533600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:40533400-40533600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr15:40533400-40533600	Enhancers	Hela-S3	cervix
32	chr15:40533400-40534000	Flanking Active TSS	Esophagus	oesophagus
33	chr15:40533400-40534200	Enhancers	Brain Anterior Caudate	brain
34	chr15:40533400-40534600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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