Variant report

Variant	rs28463345
Chromosome Location	chr4:119877359-119877360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10022588	0.83[ASN][1000 genomes]
rs10022665	0.83[ASN][1000 genomes]
rs1021377	0.95[ASN][1000 genomes]
rs12647308	0.84[ASN][1000 genomes]
rs72913151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
2	chr4:119870200-119878800	Weak transcription	Small Intestine	intestine
3	chr4:119872600-119878200	Weak transcription	Right Ventricle	heart
4	chr4:119874200-119886000	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:119875200-119885800	Weak transcription	NHLF	lung
6	chr4:119875800-119877800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:119875800-119879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:119875800-119880800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:119876400-119886000	Weak transcription	Aorta	Aorta
10	chr4:119876600-119877800	Weak transcription	Left Ventricle	heart
11	chr4:119876600-119877800	Weak transcription	Ovary	ovary
12	chr4:119876600-119877800	Weak transcription	Right Atrium	heart
13	chr4:119876600-119879000	Weak transcription	Psoas Muscle	Psoas
14	chr4:119876800-119878200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:119876800-119878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:119876800-119878400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:119876800-119882800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:119877000-119878400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:119877000-119878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:119877200-119878400	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:119877200-119878800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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