Variant report

Variant	rs28464016
Chromosome Location	chr4:15759730-15759731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11945730	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12647844	0.95[ASN][1000 genomes]
rs28520979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4473651	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6855636	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2760884	chr4:15759680-15776181	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15752600-15767600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:15755600-15760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:15758600-15759800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:15758600-15760000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr4:15758600-15760200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr4:15759000-15760000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:15759000-15760000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr4:15759000-15760000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr4:15759000-15760200	Enhancers	Primary T cells from cord blood	blood
10	chr4:15759000-15761000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:15759200-15759800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:15759200-15759800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr4:15759200-15765400	Weak transcription	Thymus	Thymus
14	chr4:15759200-15765600	Enhancers	Dnd41	blood
15	chr4:15759200-15766400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:15759200-15767800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr4:15759400-15762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:15759400-15763400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:15759600-15762200	Weak transcription	Fetal Thymus	thymus
20	chr4:15759600-15763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:15759600-15763400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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