Variant report

Variant	rs28464429
Chromosome Location	chr4:82365842-82365843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10019810	0.91[AFR][1000 genomes]
rs10026427	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv4404	chr4:82340986-82386148	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82342800-82366600	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:82345600-82380600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:82345800-82367600	Strong transcription	Liver	Liver
4	chr4:82345800-82385800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:82346200-82375800	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:82346200-82381600	Strong transcription	Fetal Thymus	thymus
7	chr4:82346400-82368000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:82346600-82380800	Strong transcription	Adipose Nuclei	Adipose
9	chr4:82346600-82386600	Weak transcription	Psoas Muscle	Psoas
10	chr4:82346600-82388400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:82346800-82382400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:82347000-82375600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:82347200-82378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:82349000-82366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:82349000-82367800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:82349000-82368800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:82349000-82374800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:82349000-82385200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr4:82349200-82368000	Weak transcription	Brain Germinal Matrix	brain
20	chr4:82351000-82377600	Weak transcription	Right Ventricle	heart
21	chr4:82351200-82366400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:82351800-82369200	Weak transcription	Esophagus	oesophagus
23	chr4:82351800-82375000	Weak transcription	Pancreas	Pancrea
24	chr4:82351800-82382800	Weak transcription	Spleen	Spleen
25	chr4:82352200-82369000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:82352400-82390000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:82353400-82366400	Weak transcription	Dnd41	blood
28	chr4:82353800-82375200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:82354200-82390800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:82354600-82369000	Weak transcription	Fetal Heart	heart
31	chr4:82355000-82366600	Weak transcription	Brain Angular Gyrus	brain
32	chr4:82356000-82366600	Weak transcription	Thymus	Thymus
33	chr4:82356400-82367400	Weak transcription	Fetal Stomach	stomach
34	chr4:82357400-82372800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:82357800-82375400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr4:82358600-82370000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:82358600-82372000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:82358600-82374000	Strong transcription	Primary B cells from cord blood	blood
39	chr4:82358800-82366200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:82358800-82367400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr4:82358800-82367600	Strong transcription	Fetal Intestine Large	intestine
42	chr4:82358800-82380600	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:82359000-82369600	Strong transcription	Placenta	Placenta
44	chr4:82359000-82370800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr4:82359000-82375200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr4:82359200-82369800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr4:82359200-82370600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:82359200-82375600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:82359200-82381000	Strong transcription	Primary T cells from cord blood	blood
50	chr4:82359800-82371200	Strong transcription	Brain Anterior Caudate	brain

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