Variant report

Variant	rs28469602
Chromosome Location	chr4:130309283-130309284
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10020190	0.87[ASN][1000 genomes]
rs17014654	1.00[ASN][1000 genomes]
rs17014681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17014729	0.87[ASN][1000 genomes]
rs28361523	1.00[ASN][1000 genomes]
rs28464110	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28472444	1.00[ASN][1000 genomes]
rs28612520	0.87[ASN][1000 genomes]
rs59246653	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130308600-130309600	Enhancers	Psoas Muscle	Psoas
2	chr4:130308600-130309600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr4:130308600-130309800	Enhancers	Colon Smooth Muscle	Colon
4	chr4:130308600-130309800	Enhancers	Stomach Smooth Muscle	stomach
5	chr4:130309200-130309400	Flanking Active TSS	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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