Variant report

Variant	rs28470682
Chromosome Location	chr3:22937700-22937701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13323766	0.86[AFR][1000 genomes]
rs9844171	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22934600-22937800	Enhancers	Rectal Smooth Muscle	rectum
2	chr3:22935600-22939200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:22935800-22939600	Weak transcription	Psoas Muscle	Psoas
4	chr3:22936000-22938600	Weak transcription	Fetal Stomach	stomach
5	chr3:22936000-22939600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:22936200-22938600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:22936600-22938400	Weak transcription	Fetal Lung	lung
8	chr3:22936600-22939000	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:22936600-22939600	Weak transcription	Ovary	ovary
10	chr3:22937200-22938200	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links