Variant report

Variant	rs28470966
Chromosome Location	chr4:54615616-54615617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13434889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28422786	1.00[ASN][1000 genomes]
rs28510790	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28564139	1.00[AMR][1000 genomes]
rs28605676	1.00[AMR][1000 genomes]
rs28702938	1.00[AMR][1000 genomes]
rs28718411	1.00[ASN][1000 genomes]
rs3762881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66529708	0.87[ASN][1000 genomes]
rs6835708	0.85[ASN][1000 genomes]
rs73153344	1.00[AMR][1000 genomes]
rs73250983	0.87[ASN][1000 genomes]
rs73817121	1.00[AMR][1000 genomes]
rs73817123	1.00[AMR][1000 genomes]
rs73817127	1.00[AMR][1000 genomes]
rs73817134	1.00[AMR][1000 genomes]
rs9994943	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54612000-54616000	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:54614600-54616000	ZNF genes & repeats	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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