Variant report

Variant	rs28471984
Chromosome Location	chr11:66363573-66363574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66233374..66235223-chr11:66362596..66364170,2	MCF-7	breast:
2	chr11:66316673..66319908-chr11:66361942..66364639,3	K562	blood:
3	chr11:66358389..66364594-chr11:66381544..66387255,17	MCF-7	breast:
4	chr11:66358904..66365230-chr11:66381918..66386995,13	MCF-7	breast:
5	chr11:66362883..66365681-chr11:66383630..66386700,3	K562	blood:
6	chr11:66358667..66365231-chr11:66403397..66409781,9	K562	blood:
7	chr11:66362395..66364354-chr11:66370212..66372742,2	MCF-7	breast:
8	chr11:66360734..66364580-chr11:66368011..66371374,4	K562	blood:
9	chr11:66360200..66362144-chr11:66362660..66365648,4	MCF-7	breast:
10	chr11:66360626..66362168-chr11:66362951..66364527,2	MCF-7	breast:
11	chr11:66363130..66364749-chr11:66372166..66374621,2	MCF-7	breast:
12	chr11:66356377..66365681-chr11:66380910..66388291,23	K562	blood:
13	chr11:66362836..66364590-chr11:66443949..66446099,2	MCF-7	breast:
14	chr11:66363080..66365268-chr11:66368011..66370677,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173914	Chromatin interaction
ENSG00000182791	Chromatin interaction
ENSG00000173992	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000199325	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000173933	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000239306	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11600012	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs12421637	1.00[MEX][hapmap]
rs3891724	1.00[CHD][hapmap]
rs4622271	1.00[MEX][hapmap]
rs471334	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66361200-66363600	Enhancers	Esophagus	oesophagus
2	chr11:66361200-66363600	Enhancers	Fetal Heart	heart
3	chr11:66361200-66366600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:66361400-66363600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr11:66361400-66363600	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:66361400-66363600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:66361400-66363600	Enhancers	Brain Germinal Matrix	brain
8	chr11:66361400-66363600	Enhancers	Pancreas	Pancrea
9	chr11:66361400-66363800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr11:66361400-66363800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:66361400-66363800	Enhancers	Fetal Thymus	thymus
12	chr11:66361400-66364400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:66361400-66364400	Enhancers	Placenta	Placenta
14	chr11:66361400-66366200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:66361400-66366200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:66361400-66366200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:66361400-66366400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:66361400-66366600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:66361400-66366800	Weak transcription	HSMMtube	muscle
20	chr11:66361400-66367000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:66361400-66369600	Weak transcription	HMEC	breast
22	chr11:66361400-66369800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:66361400-66371800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:66361400-66382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:66361400-66383400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:66361600-66363600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr11:66361600-66363600	Enhancers	Liver	Liver
28	chr11:66361600-66363600	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:66361600-66363600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:66361600-66363800	Enhancers	Brain Anterior Caudate	brain
31	chr11:66361600-66363800	Enhancers	Brain Substantia Nigra	brain
32	chr11:66361600-66363800	Enhancers	Rectal Smooth Muscle	rectum
33	chr11:66361600-66364600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr11:66361600-66364600	Enhancers	HepG2	liver
35	chr11:66361600-66366000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:66361600-66366400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:66361600-66366400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:66361600-66366400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:66361600-66366600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:66361600-66366600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:66361600-66366600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:66361600-66367000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:66361600-66367000	Weak transcription	A549	lung
44	chr11:66361600-66367200	Weak transcription	NHEK	skin
45	chr11:66361600-66367600	Weak transcription	NHDF-Ad	bronchial
46	chr11:66361600-66369600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:66361600-66372800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:66361600-66374400	Weak transcription	Psoas Muscle	Psoas
49	chr11:66361600-66377000	Weak transcription	HUVEC	blood vessel
50	chr11:66362000-66363800	Enhancers	Ovary	ovary

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