Variant report

Variant	rs28472879
Chromosome Location	chr19:41395755-41395756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10406188	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10410750	0.92[ASN][1000 genomes]
rs10411264	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10411877	0.83[ASN][1000 genomes]
rs10414481	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10416968	0.93[ASN][1000 genomes]
rs10418318	0.98[ASN][1000 genomes]
rs10419393	0.94[ASN][1000 genomes]
rs10421888	0.97[ASN][1000 genomes]
rs10423165	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10424691	0.81[ASN][1000 genomes]
rs10424834	0.85[ASN][1000 genomes]
rs11083577	0.87[ASN][1000 genomes]
rs11083580	0.90[ASN][1000 genomes]
rs11083582	0.98[ASN][1000 genomes]
rs11665969	0.97[ASN][1000 genomes]
rs11669113	0.81[ASN][1000 genomes]
rs12973598	0.85[ASN][1000 genomes]
rs12975382	0.85[ASN][1000 genomes]
rs12982395	0.93[ASN][1000 genomes]
rs2316215	0.84[ASN][1000 genomes]
rs2644904	0.90[ASN][1000 genomes]
rs28427254	0.81[ASN][1000 genomes]
rs28503746	0.96[ASN][1000 genomes]
rs28619553	0.93[ASN][1000 genomes]
rs2935235	0.92[ASN][1000 genomes]
rs3797218	0.93[ASN][1000 genomes]
rs3815714	0.90[ASN][1000 genomes]
rs3852870	0.98[ASN][1000 genomes]
rs3865457	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3869579	0.92[ASN][1000 genomes]
rs3909341	0.97[ASN][1000 genomes]
rs3909342	0.98[ASN][1000 genomes]
rs4105141	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4105142	0.97[ASN][1000 genomes]
rs4105143	0.95[ASN][1000 genomes]
rs4142867	0.93[ASN][1000 genomes]
rs4802095	0.89[ASN][1000 genomes]
rs4803389	0.93[ASN][1000 genomes]
rs4803390	0.89[ASN][1000 genomes]
rs4803391	0.92[ASN][1000 genomes]
rs4803400	0.94[ASN][1000 genomes]
rs5007415	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56081734	0.93[ASN][1000 genomes]
rs61482096	0.87[ASN][1000 genomes]
rs6508953	0.89[ASN][1000 genomes]
rs67421541	0.98[ASN][1000 genomes]
rs7252852	0.94[ASN][1000 genomes]
rs7254188	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7258590	0.84[ASN][1000 genomes]
rs7258728	0.88[ASN][1000 genomes]
rs7343061	0.92[ASN][1000 genomes]
rs8103288	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758500	chr19:41291627-41546068	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2758762	chr19:41291627-41546068	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1056244	chr19:41329218-41397661	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1832156	chr19:41332004-41399077	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1065886	chr19:41339857-41397661	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv33053	chr19:41340629-41400635	Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1827139	chr19:41348820-41395889	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1056284	chr19:41360131-41399887	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1055263	chr19:41360358-41397661	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3337314	chr19:41388910-41534583	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28472879	CYP2G1P	cis	lung	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41393200-41397600	Weak transcription	Ovary	ovary
2	chr19:41394400-41395800	Bivalent Enhancer	A549	lung
3	chr19:41395200-41395800	Enhancers	K562	blood

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