Variant report

Variant	rs28477167
Chromosome Location	chr4:15855606-15855607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10939641	1.00[EUR][1000 genomes]
rs11939896	1.00[EUR][1000 genomes]
rs2531146	1.00[EUR][1000 genomes]
rs28439648	1.00[EUR][1000 genomes]
rs28595200	1.00[EUR][1000 genomes]
rs28725403	1.00[EUR][1000 genomes]
rs6828211	1.00[EUR][1000 genomes]
rs73128022	1.00[EUR][1000 genomes]
rs9993044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878714	chr4:15840839-15895791	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15835000-15857400	Weak transcription	Psoas Muscle	Psoas
2	chr4:15842600-15856600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:15849400-15855800	Strong transcription	Thymus	Thymus
4	chr4:15850800-15863200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:15853800-15857000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:15853800-15863200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:15854000-15864400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:15854000-15868800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:15855200-15856800	Weak transcription	Dnd41	blood
10	chr4:15855200-15858200	Weak transcription	Primary T cells from cord blood	blood
11	chr4:15855400-15858600	Weak transcription	Primary B cells from cord blood	blood
12	chr4:15855600-15857200	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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