Variant report

Variant	rs28479792
Chromosome Location	chr15:50714720-50714721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50713249..50715403-chr15:50736857..50739121,2	MCF-7	breast:
2	chr15:50644978..50654282-chr15:50714279..50723145,48	MCF-7	breast:
3	chr15:50712380..50714768-chr15:50789507..50791340,2	MCF-7	breast:
4	chr15:50644601..50650486-chr15:50714318..50720349,10	K562	blood:
5	chr15:50644770..50653815-chr15:50713287..50720249,51	MCF-7	breast:
6	chr15:50714621..50716242-chr15:50826547..50828170,2	MCF-7	breast:
7	chr15:50644809..50652796-chr15:50713240..50720627,20	K562	blood:
8	chr15:50696757..50701800-chr15:50711495..50716438,5	K562	blood:
9	chr15:50702284..50703804-chr15:50714384..50716460,2	K562	blood:
10	chr15:50714595..50716933-chr2:234599004..234601578,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000167165	Chromatin interaction
ENSG00000259298	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000259715	Chromatin interaction
ENSG00000138592	Chromatin interaction
ENSG00000264109	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16963723	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28441244	0.82[AFR][1000 genomes]
rs3887421	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv904210	chr15:50702058-50786024	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50698200-50715800	Weak transcription	Primary T cells from cord blood	blood
2	chr15:50709800-50715800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:50710000-50715800	Weak transcription	Esophagus	oesophagus
4	chr15:50710400-50716000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:50711000-50715600	Weak transcription	Pancreas	Pancrea
6	chr15:50711000-50715600	Weak transcription	K562	blood
7	chr15:50713600-50716200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:50714400-50715600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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