Variant report

Variant	rs28480242
Chromosome Location	chr15:57845366-57845367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57836929..57839560-chr15:57843156..57845372,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28417250	0.91[AFR][1000 genomes]
rs28489568	0.91[AFR][1000 genomes]
rs28609908	0.85[AFR][1000 genomes]
rs28611414	0.94[AFR][1000 genomes]
rs28671179	0.88[AFR][1000 genomes]
rs28714362	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57830000-57846400	Weak transcription	Brain Substantia Nigra	brain
3	chr15:57837800-57853000	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:57839800-57847800	Enhancers	Fetal Intestine Large	intestine
5	chr15:57840000-57846600	Weak transcription	Ovary	ovary
6	chr15:57840600-57847400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:57840800-57848000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:57840800-57849400	Enhancers	Fetal Muscle Leg	muscle
9	chr15:57841000-57847800	Enhancers	Right Atrium	heart
10	chr15:57841000-57848000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:57841000-57848600	Enhancers	HSMMtube	muscle
12	chr15:57841200-57847600	Enhancers	Left Ventricle	heart
13	chr15:57841800-57847200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:57842000-57847800	Enhancers	Fetal Intestine Small	intestine
15	chr15:57842400-57846000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:57842800-57845400	Enhancers	Adipose Nuclei	Adipose
17	chr15:57842800-57847600	Enhancers	HMEC	breast
18	chr15:57842800-57848600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr15:57843000-57846800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:57843000-57847400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:57843000-57847600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:57843000-57847600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:57843000-57847600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:57843000-57847800	Enhancers	Gastric	stomach
25	chr15:57843000-57848400	Enhancers	Placenta	Placenta
26	chr15:57843000-57848600	Enhancers	Fetal Lung	lung
27	chr15:57843200-57845400	Enhancers	Fetal Muscle Trunk	muscle
28	chr15:57843200-57847600	Enhancers	Lung	lung
29	chr15:57843400-57845400	Genic enhancers	H1 Cell Line	embryonic stem cell
30	chr15:57843400-57847000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:57843400-57847200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57843400-57847600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr15:57843400-57847600	Enhancers	Pancreas	Pancrea
34	chr15:57843400-57847800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:57843600-57845400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:57843600-57845400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:57843600-57845800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:57843800-57845800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:57843800-57846200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:57843800-57847400	Weak transcription	Psoas Muscle	Psoas
41	chr15:57844200-57848800	Enhancers	Fetal Heart	heart
42	chr15:57844400-57845400	Enhancers	NHEK	skin
43	chr15:57844400-57846000	Weak transcription	Esophagus	oesophagus
44	chr15:57844400-57847600	Genic enhancers	Liver	Liver
45	chr15:57844600-57845600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr15:57844600-57846200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr15:57844600-57846200	Weak transcription	Stomach Mucosa	stomach
48	chr15:57844600-57846600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:57844600-57847000	Enhancers	HUVEC	blood vessel
50	chr15:57844600-57847400	Weak transcription	Spleen	Spleen

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