Variant report

Variant	rs28482447
Chromosome Location	chr18:29835384-29835385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11660076	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11661174	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11661186	0.93[EUR][1000 genomes]
rs11665544	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962918	0.96[EUR][1000 genomes]
rs16962924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16962941	1.00[EUR][1000 genomes]
rs16962953	0.96[EUR][1000 genomes]
rs16962965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962971	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962974	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962977	1.00[EUR][1000 genomes]
rs28394787	0.80[AFR][1000 genomes]
rs28540269	1.00[AFR][1000 genomes]
rs28673618	1.00[AFR][1000 genomes]
rs3859366	0.96[EUR][1000 genomes]
rs4462681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60291556	0.96[EUR][1000 genomes]
rs60694040	0.82[EUR][1000 genomes]
rs7243861	0.93[EUR][1000 genomes]
rs7243963	0.93[EUR][1000 genomes]
rs73419859	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs8086611	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8086990	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8087394	0.96[EUR][1000 genomes]
rs9916917	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9947150	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9950965	0.90[EUR][1000 genomes]
rs9953127	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9962307	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29823800-29848000	Weak transcription	Aorta	Aorta
2	chr18:29831400-29847600	Weak transcription	Pancreas	Pancrea
3	chr18:29832400-29837000	Weak transcription	Fetal Intestine Large	intestine
4	chr18:29832600-29836000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr18:29832600-29837400	Weak transcription	Fetal Intestine Small	intestine
6	chr18:29832800-29835600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr18:29834200-29837000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr18:29834800-29838600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr18:29835200-29861600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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