Variant report

Variant	rs284872
Chromosome Location	chr1:92168364-92168365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92166691..92169573-chr1:92171812..92173535,2	K562	blood:
2	chr1:92166312..92168639-chr1:92169592..92172203,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1613413	0.85[ASN][1000 genomes]
rs17131536	0.83[ASN][1000 genomes]
rs284866	0.85[ASN][1000 genomes]
rs284867	0.85[ASN][1000 genomes]
rs284868	0.85[ASN][1000 genomes]
rs284869	0.85[ASN][1000 genomes]
rs284871	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs284875	0.89[ASN][1000 genomes]
rs284878	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	esv2763581	chr1:92068967-92203803	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1014990	chr1:92084142-92206674	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1010179	chr1:92140209-92655952	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv535030	chr1:92140209-92655952	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92149000-92170000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:92149400-92172800	Weak transcription	Esophagus	oesophagus
3	chr1:92151200-92172800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:92152600-92184200	Strong transcription	HepG2	liver
5	chr1:92153000-92197000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:92155400-92178800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:92155600-92178800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:92155800-92171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:92155800-92191200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:92156000-92172800	Weak transcription	Gastric	stomach
11	chr1:92156200-92172800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:92156200-92177800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:92159000-92173600	Weak transcription	Fetal Kidney	kidney
14	chr1:92159400-92172800	Weak transcription	Aorta	Aorta
15	chr1:92159400-92173400	Weak transcription	Brain Substantia Nigra	brain
16	chr1:92159800-92171800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:92159800-92172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:92159800-92172800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:92159800-92183800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:92162600-92172600	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:92163200-92172800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:92163200-92172800	Weak transcription	Spleen	Spleen
23	chr1:92163200-92176800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr1:92163400-92169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:92163400-92170400	Weak transcription	Left Ventricle	heart
26	chr1:92163400-92172600	Weak transcription	Fetal Intestine Large	intestine
27	chr1:92163800-92172200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr1:92163800-92173400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr1:92164000-92172800	Weak transcription	Fetal Intestine Small	intestine
30	chr1:92164000-92184400	Weak transcription	Hela-S3	cervix
31	chr1:92164000-92195000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr1:92164200-92172600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr1:92164200-92173200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:92164200-92175000	Weak transcription	GM12878-XiMat	blood
35	chr1:92164200-92176000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr1:92164400-92170400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr1:92164600-92168800	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr1:92164800-92177800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr1:92165000-92172800	Weak transcription	Right Ventricle	heart
40	chr1:92165200-92177400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:92165400-92170200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:92165400-92170200	Weak transcription	K562	blood
43	chr1:92165400-92171800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:92165400-92178600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr1:92165400-92178600	Weak transcription	Fetal Brain Male	brain
46	chr1:92165600-92171600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr1:92165600-92175400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr1:92165800-92171600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:92165800-92172800	Weak transcription	Fetal Lung	lung
50	chr1:92165800-92184800	Weak transcription	Brain Inferior Temporal Lobe	brain

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