Variant report

Variant	rs28489692
Chromosome Location	chr7:71779403-71779404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10215010	0.80[EUR][1000 genomes]
rs10215011	0.80[EUR][1000 genomes]
rs10215139	0.80[EUR][1000 genomes]
rs10215553	0.80[EUR][1000 genomes]
rs10216201	0.80[EUR][1000 genomes]
rs10234985	0.80[EUR][1000 genomes]
rs10238714	0.80[EUR][1000 genomes]
rs10238909	0.80[EUR][1000 genomes]
rs10239699	0.80[EUR][1000 genomes]
rs10243625	0.80[EUR][1000 genomes]
rs10243740	0.80[EUR][1000 genomes]
rs10244985	0.80[ASN][1000 genomes]
rs10253092	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256008	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10256020	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10268103	0.80[EUR][1000 genomes]
rs1034618	0.80[EUR][1000 genomes]
rs1034619	0.80[EUR][1000 genomes]
rs10464195	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10950305	0.80[EUR][1000 genomes]
rs11770522	0.80[EUR][1000 genomes]
rs11971387	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12532494	0.89[ASN][1000 genomes]
rs12670234	0.89[ASN][1000 genomes]
rs13242763	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16869625	0.80[EUR][1000 genomes]
rs1914386	0.80[EUR][1000 genomes]
rs1914398	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1914399	0.90[ASN][1000 genomes]
rs28401746	0.80[EUR][1000 genomes]
rs28432195	0.80[EUR][1000 genomes]
rs28441039	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28531896	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28548784	0.80[EUR][1000 genomes]
rs28605994	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28785225	0.80[EUR][1000 genomes]
rs2944833	0.89[ASN][1000 genomes]
rs2944834	0.90[ASN][1000 genomes]
rs2944839	0.90[ASN][1000 genomes]
rs2968527	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35058779	0.80[EUR][1000 genomes]
rs4512281	0.80[EUR][1000 genomes]
rs4517001	0.86[ASN][1000 genomes]
rs4639398	0.89[ASN][1000 genomes]
rs4645475	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs485865	0.80[EUR][1000 genomes]
rs56150095	0.91[ASN][1000 genomes]
rs59378249	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61288133	0.80[EUR][1000 genomes]
rs61522141	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968408	0.80[ASN][1000 genomes]
rs6979866	0.89[ASN][1000 genomes]
rs73704335	0.80[EUR][1000 genomes]
rs73704336	0.80[EUR][1000 genomes]
rs7782517	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv529620	chr7:71604785-71935721	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv492243	chr7:71648955-71935721	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1019700	chr7:71677836-71844973	Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv538943	chr7:71677836-71844973	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv607460	chr7:71713735-71817899	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1032591	chr7:71715105-71794258	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv538945	chr7:71715105-71794258	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv470299	chr7:71740458-71815170	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv464556	chr7:71740458-71817899	Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv464557	chr7:71744896-71935721	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv607461	chr7:71744896-71935721	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1029656	chr7:71745055-71935721	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71759600-71790200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:71772200-71784400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:71772800-71780000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:71774000-71782000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:71777200-71782200	Weak transcription	Thymus	Thymus
6	chr7:71778400-71780200	Genic enhancers	Fetal Thymus	thymus
7	chr7:71778400-71782400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:71779200-71781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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