Variant report

Variant	rs28491312
Chromosome Location	chr14:81169503-81169504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs327437	0.92[AFR][1000 genomes]
rs327471	0.87[AFR][1000 genomes]
rs58018370	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81147400-81171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81149000-81171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81163200-81177800	Weak transcription	A549	lung
4	chr14:81166200-81180200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:81167400-81171000	Weak transcription	NHEK	skin
6	chr14:81167600-81174200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:81167600-81181400	Weak transcription	Fetal Thymus	thymus
8	chr14:81167800-81171200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:81168400-81171400	Weak transcription	HMEC	breast
10	chr14:81168400-81184200	Weak transcription	Thymus	Thymus
11	chr14:81169000-81175600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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