The 2.0 version of rSNPBase

Variant report

Variant rs28494622
Chromosome Location chr3:49426546-49426547
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49396800-49438800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr3:49399000-49448000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:49406000-49445200 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr3:49411000-49434600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr3:49413200-49431800 Weak transcription Duodenum Mucosa Duodenum
6 chr3:49413200-49432000 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr3:49413200-49432000 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr3:49413200-49432000 Weak transcription Fetal Kidney kidney
9 chr3:49413200-49433200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr3:49413200-49435000 Weak transcription Brain Angular Gyrus brain
11 chr3:49413200-49441400 Weak transcription Aorta Aorta
12 chr3:49413200-49443000 Weak transcription Brain Cingulate Gyrus brain
13 chr3:49413200-49447400 Weak transcription H9 Cell Line embryonic stem cell
14 chr3:49413400-49431800 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr3:49413400-49433600 Weak transcription Brain Germinal Matrix brain
16 chr3:49413400-49439000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr3:49413600-49430600 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr3:49413600-49432000 Weak transcription Fetal Lung lung
19 chr3:49413600-49433200 Weak transcription Colonic Mucosa Colon
20 chr3:49413600-49441000 Weak transcription Fetal Brain Female brain
21 chr3:49416200-49430400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr3:49416200-49431800 Weak transcription Placenta Amnion Placenta Amnion
23 chr3:49416200-49433200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr3:49416200-49435200 Weak transcription Brain Inferior Temporal Lobe brain
25 chr3:49416400-49429400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr3:49416400-49432200 Weak transcription Placenta Placenta
27 chr3:49417800-49437800 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr3:49418000-49432600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr3:49419000-49430600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr3:49422200-49443000 Weak transcription Rectal Smooth Muscle rectum
31 chr3:49423400-49431800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr3:49423800-49430200 Enhancers Primary T cells fromperipheralblood blood
33 chr3:49424000-49430600 Weak transcription Colon Smooth Muscle Colon
34 chr3:49424000-49432000 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr3:49424200-49432000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr3:49424200-49432000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr3:49424200-49432000 Weak transcription Liver Liver
38 chr3:49424200-49434800 Weak transcription Brain Anterior Caudate brain
39 chr3:49424200-49435000 Weak transcription Stomach Mucosa stomach
40 chr3:49424200-49443400 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr3:49424400-49428000 Weak transcription GM12878-XiMat blood
42 chr3:49424400-49431800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr3:49424400-49432000 Weak transcription HepG2 liver
44 chr3:49424400-49435000 Weak transcription Small Intestine intestine
45 chr3:49425000-49428200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr3:49425000-49428200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr3:49425200-49426600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr3:49425200-49427000 Genic enhancers Primary B cells from peripheral blood blood
49 chr3:49425200-49427000 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
50 chr3:49425200-49427000 Genic enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015