Variant report

Variant	rs28496512
Chromosome Location	chr13:84811525-84811526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12429502	0.83[EUR][1000 genomes]
rs17077839	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17077845	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17077905	0.80[AFR][1000 genomes]
rs74101091	0.86[AFR][1000 genomes]
rs74102808	1.00[ASN][1000 genomes]
rs9593882	1.00[ASN][1000 genomes]
rs9602393	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832664	chr13:84796715-84954393	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900688	chr13:84807007-84916858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84811000-84811800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:84811000-84811800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:84811200-84811800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:84811200-84811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:84811200-84811800	Enhancers	Brain Germinal Matrix	brain
6	chr13:84811200-84811800	Enhancers	Fetal Heart	heart
7	chr13:84811400-84811800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:84811400-84811800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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