Variant report

Variant	rs28497682
Chromosome Location	chr8:64116419-64116420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:64079282..64081242-chr8:64114968..64117653,2	MCF-7	breast:
2	chr8:64078733..64082402-chr8:64115039..64119787,5	K562	blood:
3	chr8:64115234..64118106-chr8:64120478..64122032,2	K562	blood:

Variant related genes	Relation type
ENSG00000270673	Chromatin interaction
ENSG00000185728	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10112440	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2241754	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64100000-64118800	Weak transcription	Esophagus	oesophagus
2	chr8:64100600-64122200	Weak transcription	Fetal Kidney	kidney
3	chr8:64100600-64127000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:64101200-64117200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:64101600-64128000	Weak transcription	Colonic Mucosa	Colon
6	chr8:64101600-64136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:64103400-64119800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:64103400-64127400	Weak transcription	Thymus	Thymus
9	chr8:64103600-64119800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:64103600-64120600	Weak transcription	Dnd41	blood
11	chr8:64103600-64121400	Weak transcription	Fetal Thymus	thymus
12	chr8:64103600-64122200	Weak transcription	Placenta	Placenta
13	chr8:64103600-64129800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:64104400-64124800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:64105200-64122400	Weak transcription	NHDF-Ad	bronchial
16	chr8:64105400-64122200	Weak transcription	K562	blood
17	chr8:64105800-64119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:64105800-64122200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:64107000-64127200	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:64107000-64132000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:64107400-64117200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:64108600-64117000	Weak transcription	Right Atrium	heart
23	chr8:64108600-64117600	Weak transcription	Gastric	stomach
24	chr8:64108600-64122400	Weak transcription	HMEC	breast
25	chr8:64108600-64132000	Weak transcription	Lung	lung
26	chr8:64108600-64134000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:64108800-64122200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:64109000-64132000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:64109800-64116800	Weak transcription	Ovary	ovary
30	chr8:64110800-64119400	Weak transcription	HUVEC	blood vessel
31	chr8:64111000-64119800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr8:64111200-64116800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:64112200-64119200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:64112600-64117600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr8:64112600-64118200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:64112800-64117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:64112800-64117200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:64112800-64117200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:64112800-64117400	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:64112800-64117400	Weak transcription	Stomach Mucosa	stomach
41	chr8:64112800-64122200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:64112800-64122400	Weak transcription	HepG2	liver
43	chr8:64113000-64117000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr8:64113000-64118200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:64113000-64121000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:64113200-64116600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr8:64113200-64117000	Weak transcription	Right Ventricle	heart
48	chr8:64113200-64118000	Weak transcription	Pancreas	Pancrea
49	chr8:64113200-64118000	Weak transcription	Psoas Muscle	Psoas
50	chr8:64113200-64118200	Weak transcription	Spleen	Spleen

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