Variant report

Variant	rs28499300
Chromosome Location	chr8:124589251-124589252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11992825	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11996069	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13439060	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59488911	0.89[EUR][1000 genomes]
rs7006420	0.84[EUR][1000 genomes]
rs9650084	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124585200-124590000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:124586200-124589400	Enhancers	Fetal Intestine Large	intestine
4	chr8:124586800-124589400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:124587000-124590000	Enhancers	Fetal Intestine Small	intestine
6	chr8:124587400-124592000	Weak transcription	HSMM	muscle
7	chr8:124587400-124592200	Weak transcription	Placenta	Placenta
8	chr8:124587800-124590400	Weak transcription	HSMMtube	muscle
9	chr8:124587800-124591600	Weak transcription	Fetal Heart	heart
10	chr8:124588000-124591600	Weak transcription	Psoas Muscle	Psoas
11	chr8:124588400-124590000	Enhancers	Adipose Nuclei	Adipose
12	chr8:124588400-124590600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:124588400-124591000	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:124588400-124591600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:124588400-124592800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr8:124588600-124589600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:124588800-124590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:124588800-124592200	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links