Variant report

Variant	rs28502140
Chromosome Location	chr18:7788331-7788332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1446083	0.94[ASN][1000 genomes]
rs16952376	1.00[EUR][1000 genomes]
rs16952377	1.00[EUR][1000 genomes]
rs16952381	1.00[EUR][1000 genomes]
rs16952466	1.00[EUR][1000 genomes]
rs28669857	0.98[ASN][1000 genomes]
rs4328523	1.00[EUR][1000 genomes]
rs4480882	1.00[EUR][1000 genomes]
rs58863549	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59007236	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7232461	1.00[ASN][1000 genomes]
rs7236736	1.00[EUR][1000 genomes]
rs73939363	0.87[ASN][1000 genomes]
rs73939373	1.00[ASN][1000 genomes]
rs9946476	1.00[ASN][1000 genomes]
rs9953664	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv576425	chr18:7747873-7859757	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1062454	chr18:7784432-7838015	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7761800-7789400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:7762600-7788600	Weak transcription	HepG2	liver
3	chr18:7766800-7811200	Weak transcription	Aorta	Aorta
4	chr18:7767200-7812400	Weak transcription	Pancreas	Pancrea
5	chr18:7772200-7789400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:7774000-7790000	Weak transcription	Psoas Muscle	Psoas
7	chr18:7778800-7789400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:7778800-7790000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr18:7779400-7790000	Weak transcription	Hela-S3	cervix
10	chr18:7785000-7789600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:7785000-7789600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:7785200-7789000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:7785200-7789400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr18:7785200-7789600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr18:7785200-7790000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr18:7785600-7790400	Weak transcription	Fetal Brain Male	brain
17	chr18:7786400-7789200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr18:7786600-7791800	Enhancers	A549	lung
19	chr18:7787200-7790200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:7787600-7790400	Weak transcription	Lung	lung
21	chr18:7787600-7794800	Weak transcription	Right Atrium	heart
22	chr18:7787600-7797000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr18:7787600-7798200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:7787600-7804200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr18:7787800-7789200	Weak transcription	Left Ventricle	heart
26	chr18:7787800-7796400	Weak transcription	Right Ventricle	heart
27	chr18:7787800-7806600	Weak transcription	Thymus	Thymus
28	chr18:7788000-7790200	Weak transcription	Fetal Thymus	thymus
29	chr18:7788200-7789400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr18:7788200-7789600	Weak transcription	Fetal Heart	heart

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