Variant report

Variant	rs2850323
Chromosome Location	chr18:28571083-28571084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833613	chr18:28446454-28623599	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv909515	chr18:28556767-28584556	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv470414	chr18:28566665-28576533	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv3317597	chr18:28570926-28571759	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3317598	chr18:28570926-28571759	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28566200-28572400	Weak transcription	Esophagus	oesophagus
2	chr18:28566200-28600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:28567800-28571400	Weak transcription	K562	blood
4	chr18:28568400-28572200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr18:28568800-28571600	Weak transcription	HMEC	breast
6	chr18:28568800-28572400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr18:28569400-28572000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr18:28569600-28572200	Weak transcription	NHEK	skin
9	chr18:28569800-28571200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:28570400-28572400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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