Variant report

Variant	rs2850360
Chromosome Location	chr4:102216212-102216213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1031033	0.86[ASN][1000 genomes]
rs1031034	0.85[ASN][1000 genomes]
rs1441433	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561719	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2028475	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2099813	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2583400	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2583401	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2583402	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2583406	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2583410	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850332	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2850339	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850344	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850348	0.92[EUR][1000 genomes]
rs2850349	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2850350	0.94[EUR][1000 genomes]
rs2850351	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2850352	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2850354	0.92[EUR][1000 genomes]
rs2850355	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2850356	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2850357	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2850358	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2850366	0.86[ASN][1000 genomes]
rs2850368	0.86[ASN][1000 genomes]
rs2850954	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2850963	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850967	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850969	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850974	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2850975	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2850976	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28664200	0.86[ASN][1000 genomes]
rs755961	0.89[EUR][1000 genomes]
rs920559	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs920560	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs962384	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102201200-102218200	Weak transcription	NHEK	skin
2	chr4:102207000-102216600	Weak transcription	NH-A	brain
3	chr4:102207600-102226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:102210200-102225800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:102211200-102219000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:102212200-102220600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:102212200-102226200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:102212400-102216600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:102212600-102227200	Weak transcription	Primary T cells from cord blood	blood
10	chr4:102212800-102216800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:102212800-102217400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:102212800-102221000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:102212800-102227200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:102212800-102228000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:102213200-102218000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:102213400-102221000	Weak transcription	Stomach Mucosa	stomach
17	chr4:102214600-102218600	Weak transcription	Esophagus	oesophagus
18	chr4:102214800-102225600	Weak transcription	Brain Anterior Caudate	brain
19	chr4:102214800-102227200	Weak transcription	Gastric	stomach
20	chr4:102214800-102227200	Weak transcription	Psoas Muscle	Psoas
21	chr4:102215000-102216600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:102215000-102227200	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:102215000-102227400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:102215000-102232600	Weak transcription	Pancreas	Pancrea
25	chr4:102215400-102216400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:102215400-102236600	Weak transcription	Primary B cells from cord blood	blood
27	chr4:102216200-102227400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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