Variant report

Variant	rs28512369
Chromosome Location	chr4:55764163-55764164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10003816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10009476	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10517339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1553043	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1553044	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1553045	0.87[AMR][1000 genomes]
rs60454749	0.93[AFR][1000 genomes]
rs6554212	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826975	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55763400-55764600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:55763600-55764800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr4:55763600-55765200	Enhancers	NHDF-Ad	bronchial
4	chr4:55763800-55765200	Enhancers	NH-A	brain
5	chr4:55764000-55764200	Enhancers	Placenta	Placenta
6	chr4:55764000-55764400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:55764000-55765400	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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