Variant report

Variant	rs28513515
Chromosome Location	chr15:41838000-41838001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
2	chr15:41784771..41788118-chr15:41836495..41840463,4	K562	blood:
3	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:
4	chr15:41784244..41787186-chr15:41835793..41838130,2	MCF-7	breast:
5	chr15:41812182..41819156-chr15:41830894..41838104,9	K562	blood:

Variant related genes	Relation type
ENSG00000137825	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000092445	Chromatin interaction

rs_ID	r²[population]
rs10152795	1.00[EUR][1000 genomes]
rs8030350	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41836600-41839400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:41836800-41838800	Weak transcription	Fetal Intestine Small	intestine
3	chr15:41837000-41839000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:41837000-41839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:41837000-41839000	Weak transcription	HSMMtube	muscle
6	chr15:41837000-41839200	Weak transcription	A549	lung
7	chr15:41837000-41839200	Weak transcription	HSMM	muscle
8	chr15:41837200-41839000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:41837200-41839000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:41837200-41839000	Weak transcription	Brain Substantia Nigra	brain
11	chr15:41837200-41839000	Weak transcription	NHEK	skin
12	chr15:41837200-41839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:41837200-41839200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:41837200-41839200	Weak transcription	Adipose Nuclei	Adipose
15	chr15:41837200-41839200	Weak transcription	Osteobl	bone
16	chr15:41837200-41850000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:41837200-41850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:41837400-41838800	Weak transcription	Stomach Mucosa	stomach
19	chr15:41837400-41839000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:41837400-41839000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:41837400-41839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:41837400-41839000	Weak transcription	NHDF-Ad	bronchial
23	chr15:41837400-41847000	Weak transcription	Spleen	Spleen
24	chr15:41837600-41838600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:41837600-41838600	Weak transcription	Fetal Intestine Large	intestine
26	chr15:41837600-41838600	Weak transcription	Hela-S3	cervix
27	chr15:41837600-41838800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:41837600-41838800	Weak transcription	HepG2	liver
29	chr15:41837600-41839000	Weak transcription	K562	blood

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