Variant report

Variant	rs28513857
Chromosome Location	chr5:68604283-68604284
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68602688..68605181-chr5:68606991..68608519,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAF9-3	chr5:68603495-68607031	NONHSAT101909

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28493733	0.85[EUR][1000 genomes]
rs28573355	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28584613	0.85[EUR][1000 genomes]
rs28704183	0.83[EUR][1000 genomes]
rs28730315	0.82[AMR][1000 genomes]
rs28765151	0.93[AMR][1000 genomes]
rs56315603	0.85[EUR][1000 genomes]
rs6450034	0.85[EUR][1000 genomes]
rs6865493	0.85[EUR][1000 genomes]
rs7728611	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68531400-68605000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:68541200-68620400	Weak transcription	Stomach Mucosa	stomach
3	chr5:68554200-68604400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:68564200-68611200	Weak transcription	Fetal Brain Male	brain
5	chr5:68565600-68627400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:68566800-68610800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:68575600-68605000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:68575600-68608200	Weak transcription	Right Ventricle	heart
9	chr5:68576000-68605200	Weak transcription	Left Ventricle	heart
10	chr5:68576200-68605200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:68576200-68609400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:68576400-68614400	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:68576400-68627600	Weak transcription	Brain Substantia Nigra	brain
14	chr5:68576400-68627800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:68576600-68627800	Weak transcription	Brain Angular Gyrus	brain
16	chr5:68577400-68605200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:68577400-68607800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:68577400-68628200	Weak transcription	Small Intestine	intestine
19	chr5:68577600-68619800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:68577600-68627400	Weak transcription	NHEK	skin
21	chr5:68577800-68626600	Weak transcription	A549	lung
22	chr5:68581600-68627600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:68581800-68605200	Weak transcription	GM12878-XiMat	blood
24	chr5:68581800-68608200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:68581800-68609000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:68581800-68609200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:68581800-68611000	Weak transcription	Psoas Muscle	Psoas
28	chr5:68581800-68617800	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:68581800-68626800	Weak transcription	Fetal Brain Female	brain
30	chr5:68581800-68627600	Weak transcription	Brain Anterior Caudate	brain
31	chr5:68582800-68622400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:68585000-68609000	Weak transcription	Spleen	Spleen
33	chr5:68588600-68615800	Weak transcription	Colonic Mucosa	Colon
34	chr5:68588800-68605000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:68589200-68605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr5:68590800-68605200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:68591200-68606200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr5:68591400-68605000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:68591400-68605200	Weak transcription	Thymus	Thymus
40	chr5:68591400-68606200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:68591600-68609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:68591600-68614000	Weak transcription	Osteobl	bone
43	chr5:68591600-68627600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:68595800-68605000	Weak transcription	Pancreas	Pancrea
45	chr5:68595800-68605200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr5:68595800-68605200	Weak transcription	Lung	lung
47	chr5:68596000-68605200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr5:68596000-68605200	Weak transcription	Gastric	stomach
49	chr5:68596000-68605400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr5:68596000-68626800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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