Variant report

Variant	rs28514286
Chromosome Location	chr3:52846784-52846785
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52804079..52807046-chr3:52844377..52847096,2	K562	blood:

Variant related genes	Relation type
ENSG00000114904	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13326974	1.00[AFR][1000 genomes]
rs9821055	0.82[AFR][1000 genomes]
rs9861067	0.88[AFR][1000 genomes]
rs9873856	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1010761	chr3:52804547-52851258	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1810629	chr3:52817031-52869635	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv876797	chr3:52817675-52873984	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52836800-52851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:52836800-52851800	Weak transcription	Pancreas	Pancrea
3	chr3:52838000-52847200	Enhancers	Fetal Thymus	thymus
4	chr3:52838400-52852000	Weak transcription	Spleen	Spleen
5	chr3:52841600-52850600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:52844000-52847200	Enhancers	Liver	Liver
7	chr3:52844000-52847200	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:52844000-52854000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:52844200-52856600	Weak transcription	Primary T cells from cord blood	blood
10	chr3:52844400-52857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:52844600-52851600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:52844600-52851800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:52844600-52856800	Weak transcription	Fetal Intestine Small	intestine
14	chr3:52844600-52857600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:52845400-52846800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:52845400-52851200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:52845600-52853000	Weak transcription	Brain Germinal Matrix	brain
18	chr3:52845800-52854200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:52846000-52847800	Enhancers	HepG2	liver
20	chr3:52846000-52853200	Weak transcription	Thymus	Thymus
21	chr3:52846200-52849000	Weak transcription	Right Atrium	heart
22	chr3:52846400-52860800	Weak transcription	Esophagus	oesophagus
23	chr3:52846600-52847800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:52846600-52847800	Strong transcription	Fetal Stomach	stomach
25	chr3:52846600-52849000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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