Variant report

Variant	rs28516051
Chromosome Location	chr7:28021737-28021738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10231504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250579	0.83[AFR][1000 genomes]
rs10254387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259651	0.87[AFR][1000 genomes]
rs28528810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28707205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28751937	0.87[AFR][1000 genomes]
rs6965368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6967961	1.00[AMR][1000 genomes]
rs6968677	0.83[AFR][1000 genomes]
rs6972785	1.00[AMR][1000 genomes]
rs6980134	0.90[AFR][1000 genomes]
rs7795759	0.86[AFR][1000 genomes]
rs7799801	0.87[AFR][1000 genomes]
rs7800252	0.83[AFR][1000 genomes]
rs7800622	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28002800-28034600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:28006200-28024800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:28006400-28031800	Weak transcription	NHDF-Ad	bronchial
4	chr7:28012400-28022200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:28012400-28028000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:28013400-28034200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:28015600-28032400	Weak transcription	Ovary	ovary
8	chr7:28017600-28021800	Weak transcription	Left Ventricle	heart
9	chr7:28017600-28042400	Weak transcription	Aorta	Aorta
10	chr7:28017800-28028000	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:28018000-28026200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:28020000-28032400	Weak transcription	Primary B cells from cord blood	blood
13	chr7:28020800-28022400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:28021000-28021800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:28021600-28022200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr7:28021600-28022200	ZNF genes & repeats	Fetal Stomach	stomach
17	chr7:28021600-28022400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr7:28021600-28022400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:28021600-28022400	ZNF genes & repeats	Lung	lung
20	chr7:28021600-28022400	Strong transcription	Monocytes-CD14+_RO01746	blood

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