Variant report

Variant	rs28516448
Chromosome Location	chr8:95805419-95805420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNE2-1	chr8:95804909-95806064	ENSG00000254307.1

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10094449	1.00[YRI][hapmap]
rs10106114	1.00[AMR][1000 genomes]
rs28436742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4524755	0.85[LWK][hapmap]
rs7830795	0.85[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
3	chr8:95752400-95809200	Weak transcription	NHLF	lung
4	chr8:95752600-95805600	Weak transcription	NHEK	skin
5	chr8:95773600-95809400	Weak transcription	HSMMtube	muscle
6	chr8:95780800-95808000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:95785000-95809800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:95785800-95809200	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:95786200-95811600	Weak transcription	Spleen	Spleen
10	chr8:95786200-95812800	Weak transcription	Gastric	stomach
11	chr8:95786400-95809600	Weak transcription	Lung	lung
12	chr8:95786600-95807800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:95791200-95809600	Weak transcription	Brain Angular Gyrus	brain
14	chr8:95791400-95806600	Weak transcription	Aorta	Aorta
15	chr8:95791400-95809800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr8:95791400-95812400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:95791600-95809600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:95792000-95811600	Weak transcription	Thymus	Thymus
19	chr8:95792200-95809800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:95794000-95809400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:95794000-95809600	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:95794200-95809800	Weak transcription	K562	blood
23	chr8:95794600-95805800	Weak transcription	GM12878-XiMat	blood
24	chr8:95794600-95809000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:95794800-95809200	Weak transcription	Fetal Kidney	kidney
26	chr8:95794800-95809400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:95794800-95809400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:95794800-95809400	Weak transcription	HMEC	breast
29	chr8:95794800-95809400	Weak transcription	NH-A	brain
30	chr8:95795800-95808800	Weak transcription	Fetal Brain Female	brain
31	chr8:95797800-95809200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:95798000-95809600	Weak transcription	Adipose Nuclei	Adipose
33	chr8:95798000-95810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:95798000-95810600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr8:95799200-95814400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:95799400-95806000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr8:95799400-95806000	Weak transcription	Left Ventricle	heart
38	chr8:95799400-95809400	Weak transcription	Fetal Stomach	stomach
39	chr8:95799600-95809200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:95799600-95809400	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:95799600-95809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:95799800-95805800	Weak transcription	Primary B cells from cord blood	blood
43	chr8:95799800-95809800	Weak transcription	Ovary	ovary
44	chr8:95799800-95811400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:95801400-95809200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:95801600-95806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:95801800-95809400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr8:95801800-95809600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:95802200-95809000	Weak transcription	Osteobl	bone
50	chr8:95802200-95809600	Weak transcription	Rectal Mucosa Donor 29	rectum

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