Variant report

Variant	rs28520006
Chromosome Location	chr18:8861484-8861485
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11663879	0.81[EUR][1000 genomes]
rs11664325	0.91[EUR][1000 genomes]
rs16954438	0.87[ASN][1000 genomes]
rs28505330	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5024791	0.81[AFR][1000 genomes]
rs73939566	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946047	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8859000-8861800	Enhancers	Placenta	Placenta
2	chr18:8859000-8861800	Enhancers	NHEK	skin
3	chr18:8859000-8862000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:8859000-8862000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr18:8859000-8862200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:8859400-8865000	Weak transcription	K562	blood
7	chr18:8861000-8861600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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