Variant report

Variant	rs28520470
Chromosome Location	chr4:171709711-171709712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10005626	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10005732	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10007705	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1304904	0.89[ASN][1000 genomes]
rs2332031	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2877558	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4472098	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56220232	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881606	chr4:171640683-171760509	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv3508498	chr4:171690271-171722702	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3508499	chr4:171690271-171722702	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv881415	chr4:171694739-171842726	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171709600-171710000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr4:171709600-171710200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr4:171709600-171710200	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr4:171709600-171710200	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr4:171709600-171710200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr4:171709600-171710400	Active TSS	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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