Variant report

Variant	rs28521506
Chromosome Location	chr18:44791012-44791013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9946349	1.00[AMR][1000 genomes]
rs9964499	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1819372	chr18:44774673-44799515	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44789400-44791200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr18:44789600-44791200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr18:44789600-44791200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr18:44789600-44791600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:44789600-44791600	Bivalent/Poised TSS	NH-A	brain
6	chr18:44789600-44791800	Bivalent/Poised TSS	HSMM	muscle
7	chr18:44790000-44791400	Bivalent/Poised TSS	NHDF-Ad	bronchial
8	chr18:44790200-44791800	Active TSS	Muscle Satellite Cultured Cells	--
9	chr18:44790400-44791400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr18:44790400-44791400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr18:44790600-44791400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
12	chr18:44790800-44792000	Active TSS	NHLF	lung
13	chr18:44791000-44791200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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