The 2.0 version of rSNPBase

Variant report

Variant rs2852195
Chromosome Location chr11:108433169-108433170
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:108417200-108441400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr11:108422400-108441600 Weak transcription Duodenum Mucosa Duodenum
3 chr11:108423000-108436000 Weak transcription Fetal Intestine Small intestine
4 chr11:108423400-108436000 Weak transcription Liver Liver
5 chr11:108423600-108441400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr11:108424200-108439400 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr11:108428600-108442000 Weak transcription K562 blood
8 chr11:108429200-108434600 Enhancers HSMM muscle
9 chr11:108430400-108436600 Weak transcription Brain Hippocampus Middle brain
10 chr11:108430800-108433400 Weak transcription GM12878-XiMat blood
11 chr11:108431000-108433200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr11:108431000-108434000 Weak transcription Gastric stomach
13 chr11:108431000-108434400 Enhancers Osteobl bone
14 chr11:108431000-108434600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
15 chr11:108431000-108436200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr11:108431200-108434400 Enhancers Muscle Satellite Cultured Cells --
17 chr11:108431400-108433200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr11:108432200-108433200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr11:108432200-108434000 Enhancers Fetal Lung lung
20 chr11:108432200-108434200 Genic enhancers NHEK skin
21 chr11:108432200-108434400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr11:108432200-108434600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr11:108432200-108434600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr11:108432200-108434800 Genic enhancers Placenta Placenta
25 chr11:108432200-108435200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr11:108432600-108433600 Weak transcription Fetal Kidney kidney
27 chr11:108432600-108434600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr11:108432800-108433600 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr11:108432800-108433800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr11:108432800-108433800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr11:108432800-108434200 Weak transcription Esophagus oesophagus
32 chr11:108432800-108434600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr11:108432800-108434600 Enhancers NHDF-Ad bronchial
34 chr11:108432800-108436200 Weak transcription Lung lung
35 chr11:108432800-108438200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr11:108432800-108438600 Weak transcription Pancreas Pancrea
37 chr11:108432800-108441200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
38 chr11:108432800-108441600 Weak transcription HMEC breast
39 chr11:108433000-108433200 Weak transcription Placenta Amnion Placenta Amnion
40 chr11:108433000-108434000 Weak transcription NHLF lung
41 chr11:108433000-108434600 Enhancers HSMMtube muscle
42 chr11:108433000-108444000 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015