Variant report

Variant	rs2852226
Chromosome Location	chr11:120619586-120619587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10502242	1.00[CEU][hapmap]
rs11218005	1.00[CEU][hapmap]
rs11822437	1.00[CEU][hapmap]
rs17124301	1.00[CEU][hapmap]
rs17124324	1.00[CEU][hapmap]
rs1945009	1.00[CEU][hapmap]
rs2156763	1.00[CEU][hapmap]
rs2846104	1.00[CEU][hapmap]
rs7934092	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120616800-120620600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:120616800-120625200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:120617000-120620600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:120617200-120624400	Enhancers	Brain Germinal Matrix	brain
5	chr11:120617400-120629800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:120617600-120622000	Enhancers	Brain Anterior Caudate	brain
7	chr11:120617600-120622600	Enhancers	Fetal Brain Female	brain
8	chr11:120617800-120619600	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:120618200-120620200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:120618200-120621200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:120618200-120630000	Weak transcription	Right Atrium	heart
12	chr11:120618400-120620000	Weak transcription	Brain Substantia Nigra	brain
13	chr11:120618400-120621400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:120618600-120620200	Enhancers	Esophagus	oesophagus
15	chr11:120618800-120619600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:120618800-120619600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:120618800-120620400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:120618800-120620400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:120619000-120619800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:120619000-120619800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:120619000-120620000	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:120619000-120620600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:120619000-120621400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:120619200-120619600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:120619200-120621600	Weak transcription	Fetal Brain Male	brain
26	chr11:120619200-120621800	Weak transcription	Ovary	ovary
27	chr11:120619400-120621600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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