Variant report

Variant	rs28522753
Chromosome Location	chr14:21900782-21900783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21899827..21901891-chr14:21923917..21926462,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100888	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10130503	1.00[AFR][1000 genomes]
rs10131647	0.90[AFR][1000 genomes]
rs10872898	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv948957	chr14:21616875-21928338	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv1051407	chr14:21692670-21907366	Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv541984	chr14:21692670-21907366	Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv530010	chr14:21692670-21923767	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21853200-21904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:21853400-21901800	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:21853600-21901400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:21853600-21902000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:21853600-21903400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:21853800-21901400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr14:21854000-21904000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:21856400-21900800	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr14:21857000-21900800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:21877200-21900800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:21879600-21904200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:21885400-21903000	Strong transcription	Primary T cells from cord blood	blood
13	chr14:21886400-21900800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:21886400-21903800	Strong transcription	Primary B cells from cord blood	blood
15	chr14:21886800-21900800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:21887000-21904200	Weak transcription	Right Atrium	heart
17	chr14:21887800-21901600	Strong transcription	Dnd41	blood
18	chr14:21887800-21902000	Strong transcription	HepG2	liver
19	chr14:21888000-21901000	Strong transcription	HSMM	muscle
20	chr14:21888600-21903400	Weak transcription	Stomach Mucosa	stomach
21	chr14:21896400-21902800	Weak transcription	Fetal Heart	heart
22	chr14:21897400-21904600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr14:21897600-21901800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:21899400-21902600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:21899400-21904600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:21899600-21904200	Weak transcription	Psoas Muscle	Psoas
27	chr14:21899800-21901200	Weak transcription	Hela-S3	cervix
28	chr14:21899800-21903000	Weak transcription	Brain Angular Gyrus	brain
29	chr14:21899800-21903000	Weak transcription	Brain Anterior Caudate	brain
30	chr14:21899800-21903200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:21899800-21903200	Weak transcription	Brain Substantia Nigra	brain
32	chr14:21899800-21903200	Weak transcription	Small Intestine	intestine
33	chr14:21899800-21903200	Weak transcription	NH-A	brain
34	chr14:21899800-21903200	Weak transcription	NHLF	lung
35	chr14:21899800-21903800	Weak transcription	HMEC	breast
36	chr14:21899800-21904000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:21899800-21904000	Weak transcription	HSMMtube	muscle
38	chr14:21899800-21904200	Weak transcription	K562	blood
39	chr14:21899800-21904400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:21899800-21904600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:21899800-21904600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:21899800-21904600	Weak transcription	Colonic Mucosa	Colon
43	chr14:21899800-21904600	Weak transcription	Left Ventricle	heart
44	chr14:21899800-21904600	Weak transcription	Ovary	ovary
45	chr14:21899800-21904600	Weak transcription	Right Ventricle	heart
46	chr14:21899800-21904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr14:21899800-21904800	Weak transcription	Aorta	Aorta
48	chr14:21900000-21901200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:21900000-21901200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr14:21900000-21901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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