Variant report

Variant	rs28523676
Chromosome Location	chr4:7644702-7644703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11932646	0.87[AFR][1000 genomes]
rs11936769	0.86[AFR][1000 genomes]
rs2107174	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2107175	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7633800-7646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:7634600-7644800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:7634600-7645000	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:7635200-7645000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:7636800-7646000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:7641000-7645800	Weak transcription	Fetal Stomach	stomach
7	chr4:7641200-7646000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:7641800-7644800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:7642000-7645000	Weak transcription	Fetal Brain Male	brain
10	chr4:7642200-7646000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:7642400-7645600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:7642600-7647200	Weak transcription	HepG2	liver
13	chr4:7643000-7644800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:7644200-7645000	Enhancers	Brain Substantia Nigra	brain
15	chr4:7644200-7645000	Enhancers	Fetal Kidney	kidney
16	chr4:7644400-7644800	Enhancers	Brain Cingulate Gyrus	brain
17	chr4:7644400-7644800	Enhancers	Ovary	ovary
18	chr4:7644600-7644800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr4:7644600-7645000	Enhancers	Brain Germinal Matrix	brain
20	chr4:7644600-7645200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr4:7644600-7646000	Enhancers	NH-A	brain
22	chr4:7644600-7652600	Weak transcription	Brain Anterior Caudate	brain

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