Variant report

Variant	rs28523723
Chromosome Location	chr8:126401548-126401549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126400836..126402584-chr8:126449724..126452512,2	K562	blood:
2	chr8:126398698..126402201-chr8:126441095..126443608,4	K562	blood:
3	chr8:126397190..126399796-chr8:126399864..126401786,2	K562	blood:
4	chr8:126401472..126405632-chr8:126442348..126443996,3	MCF-7	breast:
5	chr8:126400810..126402321-chr8:126411709..126414303,2	K562	blood:
6	chr8:126400844..126403508-chr8:126441583..126445667,4	MCF-7	breast:
7	chr8:126395154..126398210-chr8:126400039..126403336,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1809165	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126398400-126401600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:126398600-126404000	Weak transcription	Esophagus	oesophagus
3	chr8:126399200-126406000	Weak transcription	Gastric	stomach
4	chr8:126399600-126404200	Weak transcription	Pancreas	Pancrea
5	chr8:126400400-126401600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
6	chr8:126400400-126401600	Enhancers	Fetal Heart	heart
7	chr8:126400400-126401600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
8	chr8:126400400-126401800	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr8:126400400-126401800	Enhancers	Fetal Brain Male	brain
10	chr8:126400600-126401600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr8:126400600-126401600	Enhancers	Left Ventricle	heart
12	chr8:126400600-126401600	Enhancers	A549	lung
13	chr8:126400600-126401800	Enhancers	Placenta	Placenta
14	chr8:126400600-126403000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:126400600-126403000	Enhancers	Lung	lung
16	chr8:126400600-126403200	Weak transcription	Hela-S3	cervix
17	chr8:126400800-126401800	Enhancers	GM12878-XiMat	blood
18	chr8:126400800-126402000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:126400800-126404000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr8:126401000-126401600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr8:126401000-126401600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr8:126401000-126401600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr8:126401000-126401600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr8:126401000-126401600	Flanking Active TSS	Aorta	Aorta
25	chr8:126401000-126401600	Flanking Active TSS	Brain Angular Gyrus	brain
26	chr8:126401000-126401600	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr8:126401000-126401800	Flanking Active TSS	Brain Cingulate Gyrus	brain
28	chr8:126401000-126402400	Enhancers	K562	blood
29	chr8:126401200-126401600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:126401200-126401600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr8:126401200-126401600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:126401200-126401600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr8:126401200-126401600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr8:126401200-126401600	Bivalent Enhancer	Colon Smooth Muscle	Colon
35	chr8:126401200-126401600	Bivalent Enhancer	Fetal Intestine Large	intestine
36	chr8:126401200-126401600	Bivalent Enhancer	Fetal Lung	lung
37	chr8:126401200-126401600	Enhancers	Right Atrium	heart
38	chr8:126401200-126401600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
39	chr8:126401200-126401600	Enhancers	HSMMtube	muscle
40	chr8:126401200-126401600	Bivalent Enhancer	NHEK	skin
41	chr8:126401200-126401800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr8:126401200-126401800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
43	chr8:126401200-126401800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr8:126401200-126402200	Enhancers	Adipose Nuclei	Adipose
45	chr8:126401400-126401600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr8:126401400-126401600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr8:126401400-126401600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr8:126401400-126401600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr8:126401400-126401600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:126401400-126401600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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