Variant report

Variant	rs28524118
Chromosome Location	chr17:67117362-67117363
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:67115279..67117551-chr17:67138552..67141546,2	K562	blood:
2	chr17:67112395..67115325-chr17:67117156..67120723,3	K562	blood:
3	chr17:67115823..67118302-chr17:67121333..67123082,2	K562	blood:

Variant related genes	Relation type
ENSG00000154262	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28620744	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34498359	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34831728	1.00[AMR][1000 genomes]
rs9895065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9895692	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9912654	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9915805	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv1850212	chr17:67081732-67117428	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470598	chr17:67081830-67212595	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67077800-67137800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr17:67079400-67117600	Weak transcription	Esophagus	oesophagus
3	chr17:67081400-67118600	Weak transcription	Right Ventricle	heart
4	chr17:67087000-67130400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:67091200-67131400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr17:67091600-67130000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr17:67092200-67137600	Weak transcription	Brain Anterior Caudate	brain
8	chr17:67095800-67131000	Weak transcription	Fetal Muscle Leg	muscle
9	chr17:67096200-67143400	Weak transcription	Psoas Muscle	Psoas
10	chr17:67096400-67134000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr17:67097000-67133800	Weak transcription	Colon Smooth Muscle	Colon
12	chr17:67099000-67131600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:67101200-67143400	Weak transcription	Pancreas	Pancrea
14	chr17:67106400-67131400	Weak transcription	Left Ventricle	heart
15	chr17:67108000-67117400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr17:67109600-67129200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr17:67114200-67117600	Genic enhancers	Liver	Liver
18	chr17:67114400-67119800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:67114600-67117600	Weak transcription	Ovary	ovary
20	chr17:67114600-67162800	Weak transcription	Brain Angular Gyrus	brain
21	chr17:67114800-67118400	Weak transcription	HUVEC	blood vessel
22	chr17:67114800-67122200	Weak transcription	Adipose Nuclei	Adipose
23	chr17:67115600-67134000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr17:67115800-67118200	Weak transcription	GM12878-XiMat	blood
25	chr17:67115800-67118800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr17:67115800-67121800	Weak transcription	NHDF-Ad	bronchial
27	chr17:67115800-67130600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr17:67116000-67117400	Weak transcription	Fetal Lung	lung
29	chr17:67117200-67119600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr17:67117200-67119800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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