Variant report

Variant	rs28524960
Chromosome Location	chr4:152648261-152648262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:152648199..152650587-chr4:152655705..152657391,2	K562	blood:
2	chr4:152642909..152646471-chr4:152647150..152651425,3	K562	blood:
3	chr12:120729369..120730996-chr4:152646552..152648504,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000059691	Chromatin interaction
ENSG00000202538	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17027815	1.00[AFR][1000 genomes]
rs6834762	1.00[AFR][1000 genomes]
rs9994720	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508322	chr4:152617079-152678951	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152612000-152651000	Weak transcription	K562	blood
2	chr4:152614600-152651200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:152615000-152651000	Weak transcription	HSMM	muscle
4	chr4:152616600-152665400	Weak transcription	NHDF-Ad	bronchial
5	chr4:152621400-152651600	Weak transcription	Small Intestine	intestine
6	chr4:152625000-152651000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:152629000-152658800	Weak transcription	Pancreas	Pancrea
8	chr4:152629200-152657400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
10	chr4:152629400-152651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:152629400-152651200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:152629600-152648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:152631200-152651200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:152633400-152657000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:152636600-152651000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:152636600-152651000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:152638000-152648400	Weak transcription	Primary B cells from cord blood	blood
19	chr4:152638000-152651600	Weak transcription	Ovary	ovary
20	chr4:152638200-152649600	Weak transcription	GM12878-XiMat	blood
21	chr4:152638200-152651600	Weak transcription	Fetal Intestine Large	intestine
22	chr4:152640200-152648800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:152640600-152658800	Weak transcription	Lung	lung
24	chr4:152640800-152651200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:152640800-152651400	Weak transcription	Gastric	stomach
26	chr4:152640800-152658800	Weak transcription	Right Atrium	heart
27	chr4:152641000-152657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:152641000-152657000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:152641000-152657400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:152641200-152657600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr4:152641400-152651000	Weak transcription	HepG2	liver
32	chr4:152641400-152651200	Weak transcription	Stomach Mucosa	stomach
33	chr4:152641400-152651400	Weak transcription	HSMMtube	muscle
34	chr4:152641400-152657000	Weak transcription	Aorta	Aorta
35	chr4:152641400-152657000	Weak transcription	Liver	Liver
36	chr4:152641600-152649600	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:152643000-152651000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:152643000-152651400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:152643200-152648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:152643200-152648400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:152643200-152657000	Weak transcription	Fetal Intestine Small	intestine
42	chr4:152644400-152657000	Weak transcription	Primary T cells from cord blood	blood
43	chr4:152644600-152650800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:152644600-152666600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:152645000-152657400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr4:152646600-152649800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:152646600-152651200	Weak transcription	Left Ventricle	heart
48	chr4:152646600-152657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:152647200-152651000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:152648200-152649200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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