Variant report

Variant	rs28526452
Chromosome Location	chr15:56758889-56758890
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16976920	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1715929	1.00[EUR][1000 genomes]
rs28479263	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28500768	1.00[EUR][1000 genomes]
rs28617472	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28624506	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28656429	0.96[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28759060	1.00[EUR][1000 genomes]
rs28827001	1.00[EUR][1000 genomes]
rs9920629	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1046891	chr15:56659587-56792033	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv498847	chr15:56667038-56896395	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2525559	chr15:56669294-56897412	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv433294	chr15:56676457-56853535	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3693203	chr15:56676457-56894478	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv35150	chr15:56677730-56896304	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv9270	chr15:56686946-56760420	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2757602	chr15:56736478-56790080	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2760033	chr15:56736478-56790080	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56757600-56760000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:56757600-56760400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:56757600-56760400	Weak transcription	Stomach Mucosa	stomach
4	chr15:56757600-56760600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:56757800-56760200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:56757800-56760200	Weak transcription	Liver	Liver
7	chr15:56757800-56760200	Weak transcription	HepG2	liver
8	chr15:56757800-56760200	Weak transcription	NHLF	lung
9	chr15:56757800-56760400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:56757800-56760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:56757800-56760400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:56757800-56760400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:56757800-56760400	Weak transcription	Primary B cells from cord blood	blood
14	chr15:56757800-56760400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:56757800-56760400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:56757800-56760400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:56757800-56760400	Weak transcription	Osteobl	bone
18	chr15:56757800-56760600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:56757800-56760600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:56757800-56760600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:56757800-56760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:56757800-56760600	Weak transcription	Brain Angular Gyrus	brain
23	chr15:56757800-56760600	Weak transcription	Brain Anterior Caudate	brain
24	chr15:56757800-56760600	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:56757800-56760600	Weak transcription	Fetal Thymus	thymus
26	chr15:56757800-56760600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:56757800-56760600	Weak transcription	Right Atrium	heart
28	chr15:56757800-56760600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:56757800-56761600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:56757800-56761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:56757800-56761600	Weak transcription	Fetal Intestine Large	intestine
32	chr15:56757800-56761600	Weak transcription	Fetal Intestine Small	intestine
33	chr15:56757800-56761600	Weak transcription	Placenta	Placenta
34	chr15:56757800-56761600	Weak transcription	Pancreas	Pancrea
35	chr15:56757800-56761600	Weak transcription	K562	blood
36	chr15:56758000-56760000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:56758000-56760000	Weak transcription	Primary T cells from cord blood	blood
38	chr15:56758000-56760000	Weak transcription	Fetal Kidney	kidney
39	chr15:56758000-56760200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:56758000-56760200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:56758000-56760200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr15:56758000-56760200	Weak transcription	NHDF-Ad	bronchial
43	chr15:56758000-56760400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:56758000-56760400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr15:56758000-56760400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:56758000-56760400	Weak transcription	Thymus	Thymus
47	chr15:56758000-56760600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:56758000-56760600	Weak transcription	Adipose Nuclei	Adipose
49	chr15:56758000-56760600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:56758000-56760600	Weak transcription	Fetal Lung	lung

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